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To estimate the corneal endothelial parameters from specular microscopy images depicting cornea guttata (Fuchs dystrophy), we propose a new deep learning methodology that includes a novel attention mechanism named feedback non-local…
Converging evidence suggests that the mammalian ventral visual pathway encodes increasingly complex stimulus features in downstream areas. Using deep convolutional neural networks, we can now quantitatively demonstrate that there is indeed…
The change of retinal vasculature is an early sign of many vascular and systematic diseases, such as diabetes and hypertension. Different behaviors of retinal arterioles and venules form an important metric to measure the disease severity.…
Deep-learning based segmentation model is proposed for Optical Coherence Tomography images of human varicose vein based on the U-Net model employing atrous convolution with residual blocks, which gives an accuracy of 0.9932.
We propose a deep neural network for supervised learning on neuroanatomical shapes. The network directly operates on raw point clouds without the need for mesh processing or the identification of point correspondences, as spatial…
Fine-grained classification of microscopic image data with limited samples is an open problem in computer vision and biomedical imaging. Deep learning based vision systems mostly deal with high number of low-resolution images, whereas…
Task-specific microscopy datasets are often too small to train deep learning models that learn robust feature representations. Self-supervised learning (SSL) can mitigate this by pretraining on large unlabeled datasets, but it remains…
Artifacts pose a significant challenge in medical imaging, impacting diagnostic accuracy and downstream analysis. While image-based approaches for detecting artifacts can be effective, they often rely on preprocessing methods that can lead…
The need for labour intensive pixel-wise annotation is a major limitation of many fully supervised learning methods for segmenting bioimages that can contain numerous object instances with thin separations. In this paper, we introduce a…
Fourier neural operators (FNOs) are invariant with respect to the size of input images, and thus images with any size can be fed into FNO-based frameworks without any modification of network architectures, in contrast to traditional…
In this work we propose a deep learning network for deformable image registration (DIRNet). The DIRNet consists of a convolutional neural network (ConvNet) regressor, a spatial transformer, and a resampler. The ConvNet analyzes a pair of…
Deep Learning (DL) holds great promise in reshaping the industry owing to its precision, efficiency, and objectivity. However, the brittleness of DL models to noisy and out-of-distribution inputs is ailing their deployment in sensitive…
Automatic segmentation of neuronal topology is critical for handling large scale neuroimaging data, as it can greatly accelerate neuron annotation and analysis. However, the intricate morphology of neuronal branches and the occlusions among…
Deep learning based methods, especially convolutional neural networks (CNNs) have been successfully applied in the field of single image super-resolution (SISR). To obtain better fidelity and visual quality, most of existing networks are of…
Medical image segmentation is a difficult but important task for many clinical operations such as cardiac bi-ventricular volume estimation. More recently, there has been a shift to utilizing deep learning and fully convolutional neural…
Medical images used in clinical practice are heterogeneous and not the same quality as scans studied in academic research. Preprocessing breaks down in extreme cases when anatomy, artifacts, or imaging parameters are unusual or protocols…
The permeability of complex porous materials can be obtained via direct flow simulation, which provides the most accurate results, but is very computationally expensive. In particular, the simulation convergence time scales poorly as…
Deep convolutional neural networks perform better on images containing spatially invariant noise (synthetic noise); however, their performance is limited on real-noisy photographs and requires multiple stage network modeling. To advance the…
Convolutional Neural Networks have played a significant role in various medical imaging tasks like classification and segmentation. They provide state-of-the-art performance compared to classical image processing algorithms. However, the…
Recent deep learning models have shown remarkable performance in image classification. While these deep learning systems are getting closer to practical deployment, the common assumption made about data is that it does not carry any…