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Understanding the structure of high-dimensional data is fundamental to neuroscience and other data-intensive scientific fields. While persistent homology effectively identifies basic topological features such as "holes," it lacks the…

Algebraic Topology · Mathematics 2025-07-16 Ekaterina S. Ivshina , Galit Anikeeva , Ling Zhou

Finding an optimal parameter of a black-box function is important for searching stable material structures and finding optimal neural network structures, and Bayesian optimization algorithms are widely used for the purpose. However, most of…

Machine Learning · Computer Science 2019-02-27 Tatsuya Shiraishi , Tam Le , Hisashi Kashima , Makoto Yamada

Testing for the equality of two high-dimensional distributions is a challenging problem, and this becomes even more challenging when the sample size is small. Over the last few decades, several graph-based two-sample tests have been…

Methodology · Statistics 2019-11-22 Soham Sarkar , Rahul Biswas , Anil K. Ghosh

The stochastic block model is widely used for detecting community structures in network data. However, the research interest of much literature focuses on the study of one sample of stochastic block models. How to detect the difference of…

Methodology · Statistics 2022-12-21 Kang Fu , Jianwei Hu , Seydou Keita , Hang Liu

Cell biologists study in parallel the morphology of cells with the regulation mechanisms that modify this morphology. Such studies are complicated by the inherent heterogeneity present in the cell population. It remains difficult to define…

Quantitative Methods · Quantitative Biology 2025-12-23 Yossi Bokor Bleile , Pooja Yadav , Patrice Koehl , Florian Rehfeldt

In this study, we present and analyze a framework for geometric and topological estimation for mapping of unknown environments. We consider agents mimicking motion behaviors of cyborg insects, known as biobots, and exploit coordinate-free…

Robotics · Computer Science 2016-07-04 Alireza Dirafzoon , Alper Bozkurt , Edgar Lobaton

Persistent homology (PH) has been widely applied to graph data to extract topological features. However, little attention has been paid to how different distance functions on a graph affect the resulting persistence barcodes and their…

Algebraic Topology · Mathematics 2026-02-17 Eunwoo Heo , Byeongchan Choi , Jae-Hun Jung

We apply persistent homology, the main method in topological data analysis, to the study of demographic data. Persistence diagrams efficiently summarize information about clusters or peaks in a region's demographic data. To illustrate how…

Algebraic Topology · Mathematics 2023-10-13 Jakini A. Kauba , Thomas Weighill

Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

Quantitative Methods · Quantitative Biology 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo

The statistical mechanical approach to complex networks is the dominant paradigm in describing natural and societal complex systems. The study of network properties, and their implications on dynamical processes, mostly focus on locally…

Statistical Mechanics · Physics 2013-06-27 Giovanni Petri , Martina Scolamiero , Irene Donato , Francesco Vaccarino

Recent years have witnessed an increased interest in the application of persistent homology, a topological tool for data analysis, to machine learning problems. Persistent homology is known for its ability to numerically characterize the…

Neural and Evolutionary Computing · Computer Science 2016-08-29 Jen-Yu Liu , Shyh-Kang Jeng , Yi-Hsuan Yang

In some recent papers the classical `splitting necklace theorem' is linked in an interesting way with a geometric `pattern avoidance problem'. We explore the topological constraints on the existence of a (relaxed) measurable coloring of R^d…

Combinatorics · Mathematics 2013-06-03 Sinisa Vrecica , Rade Zivaljevic

We consider the task of topology discovery of sparse random graphs using end-to-end random measurements (e.g., delay) between a subset of nodes, referred to as the participants. The rest of the nodes are hidden, and do not provide any…

Social and Information Networks · Computer Science 2012-03-06 Animashree Anandkumar , Avinatan Hassidim , Jonathan Kelner

A topos theoretic generalisation of the category of sets allows for modelling spaces which vary according to time intervals. Persistent homology, or more generally, persistence is a central tool in topological data analysis, which examines…

Rings and Algebras · Mathematics 2015-06-23 João Pita Costa , Mikael Vejdemo Johansson , Primož Škraba

Statistically equivalent blocks are not frequently considered in the context of nonparametric two-sample hypothesis testing. Despite the limited exposure, this paper shows that a number of classical nonparametric hypothesis tests can be…

Methodology · Statistics 2025-06-11 Chase Holcombe

Popular network models such as the mixed membership and standard stochastic block model are known to exhibit distinct geometric structure when embedded into $\mathbb{R}^{d}$ using spectral methods. The resulting point cloud concentrates…

Statistics Theory · Mathematics 2021-10-15 Vinesh Solanki , Patrick Rubin-Delanchy , Ian Gallagher

The conventional definition of a topological metric over a space specifies properties that must be obeyed by any measure of "how separated" two points in that space are. Here it is shown how to extend that definition, and in particular the…

Adaptation and Self-Organizing Systems · Physics 2007-10-15 David H. Wolpert

Metric graphs are ubiquitous in science and engineering. For example, many data are drawn from hidden spaces that are graph-like, such as the cosmic web. A metric graph offers one of the simplest yet still meaningful ways to represent the…

Computational Geometry · Computer Science 2017-12-05 Tamal K. Dey , Dayu Shi , Yusu Wang

Under the banner of `Big Data', the detection and classification of structure in extremely large, high dimensional, data sets, is, one of the central statistical challenges of our times. Among the most intriguing approaches to this…

Methodology · Statistics 2022-06-08 Robert J. Adler , Sarit Agami , Pratyush Pranav

Boolean formulae compactly encode huge, constrained search spaces. Thus, variability-intensive systems are often encoded with Boolean formulae. The search space of a variability-intensive system is usually too large to explore without…

Logic in Computer Science · Computer Science 2025-03-19 Olivier Zeyen , Maxime Cordy , Martin Gubri , Gilles Perrouin , Mathieu Acher