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Clinical trials (CTs) often fail due to inadequate patient recruitment. This paper tackles the challenges of CT retrieval by presenting an approach that addresses the patient-to-trials paradigm. Our approach involves two key components in a…

Information Retrieval · Computer Science 2023-07-04 Wojciech Kusa , Óscar E. Mendoza , Petr Knoth , Gabriella Pasi , Allan Hanbury

A practical approach to activate long chain-of-thoughts reasoning ability in pre-trained large language models is to perform supervised fine-tuning on instruction datasets synthesized by strong Large Reasoning Models such as DeepSeek-R1,…

Computation and Language · Computer Science 2025-12-24 Cehao Yang , Xueyuan Lin , Xiaojun Wu , Chengjin Xu , Xuhui Jiang , Honghao Liu , Hui Xiong , Jian Guo

Radiology report generation requires advanced medical image analysis, effective temporal reasoning, and accurate text generation. Although recent innovations, particularly multimodal large language models, have shown improved performance,…

Computation and Language · Computer Science 2025-11-11 Kai Zhang , Christopher Malon , Lichao Sun , Martin Renqiang Min

Large language models (LLMs), including zero-shot and few-shot paradigms, have shown promising capabilities in clinical text generation. However, real-world applications face two key challenges: (1) patient data is highly unstructured,…

Computation and Language · Computer Science 2025-07-10 Garapati Keerthana , Manik Gupta

Language models often pre-train on large unsupervised text corpora, then fine-tune on additional task-specific data. However, typical fine-tuning schemes do not prioritize the examples that they tune on. We show that, if you can prioritize…

Computation and Language · Computer Science 2023-05-12 Ian Osband , Seyed Mohammad Asghari , Benjamin Van Roy , Nat McAleese , John Aslanides , Geoffrey Irving

Large Language Models (LLMs) have demonstrated significant potential in transforming clinical applications. In this study, we investigate the efficacy of four techniques in adapting LLMs for clinical use-cases: continuous pretraining,…

The field of clinical natural language processing has been advanced significantly since the introduction of deep learning models. The self-supervised representation learning and the transfer learning paradigm became the methods of choice in…

Computation and Language · Computer Science 2020-04-27 Andrey Kormilitzin , Nemanja Vaci , Qiang Liu , Alejo Nevado-Holgado

Large pre-trained language models have recently gained significant traction due to their improved performance on various down-stream tasks like text classification and question answering, requiring only few epochs of fine-tuning. However,…

Computation and Language · Computer Science 2023-09-01 Souvik Kundu , Sharath Nittur Sridhar , Maciej Szankin , Sairam Sundaresan

Machine learning-based multi-label medical text classifications can be used to enhance the understanding of the human body and aid the need for patient care. We present a broad study on clinical natural language processing techniques to…

Information Retrieval · Computer Science 2020-04-02 Vithya Yogarajan , Jacob Montiel , Tony Smith , Bernhard Pfahringer

The massive scale and growth of textual biomedical data have made its indexing and classification increasingly important. However, existing research on this topic mainly utilized convolutional and recurrent neural networks, which generally…

Computation and Language · Computer Science 2022-03-08 Bruce Nguyen , Shaoxiong Ji

Automatic conversion of free-text radiology reports into structured data using Natural Language Processing (NLP) techniques is crucial for analyzing diseases on a large scale. While effective for tasks in widely spoken languages like…

Computation and Language · Computer Science 2024-05-24 Liam Hazan , Gili Focht , Naama Gavrielov , Roi Reichart , Talar Hagopian , Mary-Louise C. Greer , Ruth Cytter Kuint , Dan Turner , Moti Freiman

Introduction: Timely care in a specialised neuro-intensive therapy unit (ITU) reduces mortality and hospital stays, with planned admissions being safer than unplanned ones. However, post-operative care decisions remain subjective. This…

Objective: To assess the performance of the OpenAI GPT API in accurately and efficiently identifying relevant titles and abstracts from real-world clinical review datasets and compare its performance against ground truth labelling by two…

Computation and Language · Computer Science 2023-10-09 Eddie Guo , Mehul Gupta , Jiawen Deng , Ye-Jean Park , Mike Paget , Christopher Naugler

Medical vision foundation models remain limited in downstream tasks, particularly volumetric medical image segmentation. While fine-tuning on labeled target-domain data improves performance, existing approaches typically rely on randomly…

Image and Video Processing · Electrical Eng. & Systems 2026-05-07 Jin Yang , Daniel S. Marcus , Aristeidis Sotiras

Configuration optimization remains a critical bottleneck in machine learning, requiring coordinated tuning across model architecture, training strategy, feature engineering, and hyperparameters. Traditional approaches treat these dimensions…

Artificial Intelligence · Computer Science 2025-08-22 Yuxing Lu , Yucheng Hu , Nan Sun , Xukai Zhao

Foundation models pre-trained on large-scale data have been widely witnessed to achieve success in various natural imaging downstream tasks. Parameter-efficient fine-tuning (PEFT) methods aim to adapt foundation models to new domains by…

Computer Vision and Pattern Recognition · Computer Science 2025-03-24 Wenqiang Zu , Shenghao Xie , Qing Zhao , Guoqi Li , Lei Ma

The purpose of this study is to analyze the efficacy of transfer learning techniques and transformer-based models as applied to medical natural language processing (NLP) tasks, specifically radiological text classification. We used 1,977…

Computation and Language · Computer Science 2020-02-19 Daniel Ranti , Katie Hanss , Shan Zhao , Varun Arvind , Joseph Titano , Anthony Costa , Eric Oermann

The recent success of general-domain large language models (LLMs) has significantly changed the natural language processing paradigm towards a unified foundation model across domains and applications. In this paper, we focus on assessing…

Fine-tuning pre-trained models has recently yielded remarkable performance gains in graph neural networks (GNNs). In addition to pre-training techniques, inspired by the latest work in the natural language fields, more recent work has…

Machine Learning · Computer Science 2023-12-12 Shengrui Li , Xueting Han , Jing Bai

As the scale of vision models continues to grow, Visual Prompt Tuning (VPT) has emerged as a parameter-efficient transfer learning technique, noted for its superior performance compared to full fine-tuning. However, indiscriminately…

Computer Vision and Pattern Recognition · Computer Science 2024-12-25 Haowei Zhu , Fangyuan Zhang , Rui Qin , Tianxiang Pan , Junhai Yong , Bin Wang
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