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Experiments, in particular on biological systems, typically probe lower-dimensional observables which are projections of high-dimensional dynamics. In order to infer consistent models capturing the relevant dynamics of the system, it is…

Statistical Mechanics · Physics 2025-11-18 Xizhu Zhao , Dmitrii E. Makarov , Aljaž Godec

The main motivation of this work is to assess the validity of a LWR traffic flow model to model measurements obtained from trajectory data, and propose extensions of this model to improve it. A formulation for a discrete dynamical system is…

Signal Processing · Electrical Eng. & Systems 2023-12-06 Mike Pereira , Pinar Boyraz Baykas , Balázs Kulcsár , Annika Lang

We formulate a full-counting statistics description to study energy exchange in multi-terminal junctions. Our approach applies to quantum systems that are coupled either additively or non-additively (cooperatively) to multiple reservoirs.…

Mesoscale and Nanoscale Physics · Physics 2018-08-29 Hava Meira Friedman , Bijay Kumar Agarwalla , Dvira Segal

We develop a structure-preserving computational framework for optimal mixing control in incompressible flows. Our approach exactly conserves the continuous system's key invariants (mass and $L^2$-energy), while also maintaining discrete…

Numerical Analysis · Mathematics 2026-01-13 Weiwei Hu , Ziqian Li , Yubiao Zhang , Enrique Zuazua

We consider steady states of dynamics that have an underlying network structure. We study how a steady state responds to small perturbations in the network parameters and how this sensitivity is connected to the network structure. We…

Molecular Networks · Quantitative Biology 2023-03-20 Robin Chemnitz

Transition State Theory is a central cornerstone in reaction dynamics. Its key step is the identification of a dividing surface that is crossed only once by all reactive trajectories. This assumption is often badly violated, especially when…

Chemical Physics · Physics 2015-05-07 F. Revuelta , Thomas Bartsch , R. M. Benito , F. Borondo

Filtering is concerned with the sequential estimation of the state, and uncertainties, of a Markovian system, given noisy observations. It is particularly difficult to achieve accurate filtering in complex dynamical systems, such as those…

Probability · Mathematics 2015-12-14 Wonjung Lee , Andrew Stuart

This paper presents a new theory of turbulent mixing in stirred reactors. The degree of homogeneity of a mixed fluid may be characterized by the Kolmogorov micro-scale. The smaller its value, the better homogeneity. The micro-scale scales…

Fluid Dynamics · Physics 2016-04-26 Helmut Z. Baumert , Bernhard Wessling

Model reduction of Markov processes is a basic problem in modeling state-transition systems. Motivated by the state aggregation approach rooted in control theory, we study the statistical state compression of a discrete-state Markov chain…

Machine Learning · Statistics 2019-11-26 Anru Zhang , Mengdi Wang

A one-dimensional multi-phase flow model for thermomagnetically pumped ferrofluid with heat transfer is proposed. The thermodynamic model is a combination of a simplified particle model and thermodynamic equations of state for the base…

Computational Physics · Physics 2016-06-01 Eskil Aursand , Magnus Aa. Gjennestad , Karl Yngve Lervåg , Halvor Lund

A Markov state model is a powerful tool that can be used to track the evolution of populations of configurations in an atomistic representation of a protein. For a coarse-grained linear chain model with discontinuous interactions, the…

Soft Condensed Matter · Physics 2024-02-06 Margarita Colberg , Jeremy Schofield

Shallow Recurrent Decoder networks are a novel data-driven methodology able to provide accurate state estimation in engineering systems, such as nuclear reactors. This deep learning architecture is a robust technique designed to map the…

Computational Engineering, Finance, and Science · Computer Science 2025-10-15 Stefano Riva , Carolina Introini , Josè Nathan Kutz , Antonio Cammi

Metal hydrides have been studied for use in energy storage, hydrogen storage, and air-conditioning (A/C) systems. A common architecture for A/C and energy storage systems is two metal hydride reactors connected to each other so that…

Systems and Control · Electrical Eng. & Systems 2025-02-04 Patrick Krane , Austin L. Nash , Davide Ziviani , James E. Braun , Amy M. Marconnet , Neera Jain

We propose a new approach to the transfer operator based analysis of the conformation dynamics of molecules. It is based on a statistical independence ansatz for the eigenfunctions of the operator related to a partitioning into subsystems.…

Numerical Analysis · Mathematics 2009-07-13 Gero Friesecke , Oliver Junge , Péter Koltai

The paper deals with a certain class of random evolutions. We develop a construction that yields an invariant measure for a continuous-time Markov process with random transitions. The approach is based on a particular way of constructing…

Probability · Mathematics 2015-10-20 Y. Belopolskaya , Y. Suhov

Transition states (TSs) are crucial for understanding reaction mechanisms, yet their exploration is limited by the complexity of experimental and computational approaches. Here we propose TS-DFM, a flow matching framework that predicts TSs…

Machine Learning · Computer Science 2025-11-24 Yufei Luo , Xiang Gu , Jian Sun

In this work, we focus on the stationary analysis of a specific class of continuous time Markov-modulated reflected random walks in the quarter plane with applications in the modelling of two-node Markov-modulated queueing networks with…

Probability · Mathematics 2020-06-02 Ioannis Dimitriou

This paper studies the feedback stabilization problem of the motion of a tank that contains an incompressible, Newtonian, viscous liquid. The control input is the force applied on the tank and the overall system consists of two nonlinear…

Optimization and Control · Mathematics 2021-08-26 Iasson Karafyllis , Miroslav Krstic

We study the statistics of fluid (gas) density and concentration of passive tracer particles (dust) in compressible turbulence. We raise the question of whether the fluid density which is an active field that reacts back on the transporting…

Fluid Dynamics · Physics 2019-08-28 Itzhak Fouxon , Michael Mond

Recent results have shown how to partition the space of Markov systems into dynamical equivalence classes. These equivalence classes structure transport properties in such a way that makes, among other features, their responses fully…

Statistical Mechanics · Physics 2024-02-21 David Andrieux