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Current volumetric biomedical foundation models struggle to generalize as public 3D datasets are small and do not cover the broad diversity of medical procedures, conditions, anatomical regions, and imaging protocols. We address this by…

Computer Vision and Pattern Recognition · Computer Science 2025-03-04 Neel Dey , Benjamin Billot , Hallee E. Wong , Clinton J. Wang , Mengwei Ren , P. Ellen Grant , Adrian V. Dalca , Polina Golland

This paper demonstrates that spatial information can be used to learn interpretable representations in medical images using Self-Supervised Learning (SSL). Our proposed method, ISImed, is based on the observation that medical images exhibit…

Computer Vision and Pattern Recognition · Computer Science 2024-10-23 Nabil Jabareen , Dongsheng Yuan , Sören Lukassen

Recent advances in deep learning have achieved promising performance for medical image analysis, while in most cases ground-truth annotations from human experts are necessary to train the deep model. In practice, such annotations are…

Computer Vision and Pattern Recognition · Computer Science 2020-03-03 Jianbo Jiao , Richard Droste , Lior Drukker , Aris T. Papageorghiou , J. Alison Noble

Segmentation is one of the most important tasks in the medical imaging pipeline as it influences a number of image-based decisions. To be effective, fully supervised segmentation approaches require large amounts of manually annotated…

Computer Vision and Pattern Recognition · Computer Science 2026-03-19 Tyler Ward , Aaron Moseley , Abdullah-Al-Zubaer Imran

Machine learning models of vastly different modalities and architectures are being trained to predict the behavior of molecules, materials, and proteins. However, it remains unclear whether they learn similar internal representations of…

Machine Learning · Computer Science 2025-12-04 Sathya Edamadaka , Soojung Yang , Ju Li , Rafael Gómez-Bombarelli

Self-supervised learning approaches leverage unlabeled samples to acquire generic knowledge about different concepts, hence allowing for annotation-efficient downstream task learning. In this paper, we propose a novel self-supervised method…

Computer Vision and Pattern Recognition · Computer Science 2020-10-27 Aiham Taleb , Christoph Lippert , Tassilo Klein , Moin Nabi

Recognizing multiple objects in an image is challenging due to occlusions, and becomes even more so when the objects are small. While promising, existing multi-label image recognition models do not explicitly learn context-based…

Computer Vision and Pattern Recognition · Computer Science 2023-10-31 Hasib Zunair , A. Ben Hamza

Self-supervised learning excels in learning representations from large amounts of unlabeled data, demonstrating success across multiple data modalities. Yet, extending self-supervised learning to new modalities is non-trivial because the…

Machine Learning · Computer Science 2024-02-23 Johnathan Xie , Yoonho Lee , Annie S. Chen , Chelsea Finn

Transfer learning from natural images to medical images has been established as one of the most practical paradigms in deep learning for medical image analysis. To fit this paradigm, however, 3D imaging tasks in the most prominent imaging…

Computer Vision and Pattern Recognition · Computer Science 2020-12-18 Zongwei Zhou , Vatsal Sodha , Jiaxuan Pang , Michael B. Gotway , Jianming Liang

Recent advances in deep learning and computer vision have reduced many barriers to automated medical image analysis, allowing algorithms to process label-free images and improve performance. However, existing techniques have extreme…

Computer Vision and Pattern Recognition · Computer Science 2022-11-22 Pranav Singh , Elena Sizikova , Jacopo Cirrone

The research community has witnessed the powerful potential of self-supervised Masked Image Modeling (MIM), which enables the models capable of learning visual representation from unlabeled data. In this paper, to incorporate both the…

Computer Vision and Pattern Recognition · Computer Science 2023-12-01 Wenxuan Wang , Jing Wang , Chen Chen , Jianbo Jiao , Yuanxiu Cai , Shanshan Song , Jiangyun Li

Self-supervised learning methods have witnessed a recent surge of interest after proving successful in multiple application fields. In this work, we leverage these techniques, and we propose 3D versions for five different self-supervised…

Computer Vision and Pattern Recognition · Computer Science 2020-11-03 Aiham Taleb , Winfried Loetzsch , Noel Danz , Julius Severin , Thomas Gaertner , Benjamin Bergner , Christoph Lippert

The performance of supervised deep learning methods for medical image segmentation is often limited by the scarcity of labeled data. As a promising research direction, semi-supervised learning addresses this dilemma by leveraging unlabeled…

Image and Video Processing · Electrical Eng. & Systems 2024-05-13 Zihang Liu , Chunhui Zhao

Medical image segmentation (MIS) is a fundamental component of computer-assisted diagnosis and clinical decision support systems. Over the past decade, numerous architectures specifically tailored to medical imaging have emerged to address…

Computer Vision and Pattern Recognition · Computer Science 2026-03-16 Vanessa Borst , Samuel Kounev

Unsupervised representation learning aims at finding methods that learn representations from data without annotation-based signals. Abstaining from annotations not only leads to economic benefits but may - and to some extent already does -…

Computer Vision and Pattern Recognition · Computer Science 2023-12-04 Bonifaz Stuhr

Self-supervised learning has shown great promise due to its capability to train deep learning MRI reconstruction methods without fully-sampled data. Current self-supervised learning methods for physics-guided reconstruction networks split…

Image and Video Processing · Electrical Eng. & Systems 2022-07-19 Burhaneddin Yaman , Hongyi Gu , Seyed Amir Hossein Hosseini , Omer Burak Demirel , Steen Moeller , Jutta Ellermann , Kâmil Uğurbil , Mehmet Akçakaya

Semantic segmentation of medical images is pivotal in applications like disease diagnosis and treatment planning. While deep learning has excelled in automating this task, a major hurdle is the need for numerous annotated segmentation…

Image and Video Processing · Electrical Eng. & Systems 2024-09-02 Li Zhang , Basu Jindal , Ahmed Alaa , Robert Weinreb , David Wilson , Eran Segal , James Zou , Pengtao Xie

Foundation models have recently gained tremendous popularity in medical image analysis. State-of-the-art methods leverage either paired image-text data via vision-language pre-training or unpaired image data via self-supervised pre-training…

Computer Vision and Pattern Recognition · Computer Science 2025-07-24 Lei Zhu , Jun Zhou , Rick Siow Mong Goh , Yong Liu

Semi-supervised learning has demonstrated great potential in medical image segmentation by utilizing knowledge from unlabeled data. However, most existing approaches do not explicitly capture high-level semantic relations between distant…

Computer Vision and Pattern Recognition · Computer Science 2023-12-07 Qianying Liu , Xiao Gu , Paul Henderson , Fani Deligianni

Self-supervised learning is showing great promise for monocular depth estimation, using geometry as the only source of supervision. Depth networks are indeed capable of learning representations that relate visual appearance to 3D properties…

Computer Vision and Pattern Recognition · Computer Science 2020-02-28 Vitor Guizilini , Rui Hou , Jie Li , Rares Ambrus , Adrien Gaidon