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The recently proposed Segment Anything Model (SAM) is a general tool for image segmentation, but it requires additional adaptation and careful fine-tuning for medical image segmentation, especially for small, irregularly-shaped, and…

Computer Vision and Pattern Recognition · Computer Science 2024-07-26 Yaxi Chen , Aleksandra Ivanova , Shaheer U. Saeed , Rikin Hargunani , Jie Huang , Chaozong Liu , Yipeng Hu

Raman spectroscopy is a promising tool for microbial identification, yet its implementation in microbiology and clinical workflow is still restricted due to the accompanying additional preparation required to focus on microbial signals.…

Quantitative Methods · Quantitative Biology 2026-03-19 Jeong Hee Kim , Jia Dong , Marissa Morales , Loza Tadesse

Foundation segmentation models such as SAM and SAM-2 perform well on natural images but struggle with brain MRIs where structures like the caudate and thalamus lack sharp boundaries and have low contrast. Rather than fine tune these models…

Image and Video Processing · Electrical Eng. & Systems 2025-11-26 Keith Moore

Visual foundation models have achieved remarkable results in zero-shot image classification and segmentation, but zero-shot change detection remains an open problem. In this paper, we propose the segment any change models (AnyChange), a new…

Computer Vision and Pattern Recognition · Computer Science 2025-02-18 Zhuo Zheng , Yanfei Zhong , Liangpei Zhang , Stefano Ermon

Deep learning-based object detection has revolutionized Precision Livestock Farming (PLF), yet a critical barrier remains: high-performance Foundation Models (such as SAM 3) are too computationally intensive for edge deployment, while…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Marcos Vinicius Mendes Faria , Thiago Borges Pereira , Isabella C. F. S. Condotta , Thiago Meireles Paixão , Francisco de Assis Boldt

The Segment Anything Model (SAM) serves as a fundamental model for semantic segmentation and demonstrates remarkable generalization capabilities across a wide range of downstream scenarios. In this empirical study, we examine SAM's…

Image and Video Processing · Electrical Eng. & Systems 2023-08-15 An Wang , Mobarakol Islam , Mengya Xu , Yang Zhang , Hongliang Ren

The Segment Anything Model (SAM) has demonstrated remarkable capabilities of scaled-up segmentation models, enabling zero-shot generalization across a variety of domains. By leveraging large-scale foundational models as pre-trained models,…

Computer Vision and Pattern Recognition · Computer Science 2023-08-29 Weijia Feng , Lingting Zhu , Lequan Yu

Labelling images of Lepidoptera (moths) from automated camera systems is vital for understanding insect declines. However, accurate species identification is challenging due to domain shifts between curated images and noisy field imagery.…

Computer Vision and Pattern Recognition · Computer Science 2025-08-28 Ross J Gardiner , Guillaume Mougeot , Sareh Rowlands , Benno I Simmons , Flemming Helsing , Toke Thomas Høye

This paper provides insights on the effectiveness of the zero shot, prompt-based Segment Anything Model (SAM) and its updated versions, SAM 2 and SAM 2.1, along with the non-promptable conventional neural network (CNN), for segmenting solar…

Computer Vision and Pattern Recognition · Computer Science 2025-01-06 Osher Rafaeli , Tal Svoray , Roni Blushtein-Livnon , Ariel Nahlieli

Purpose: Accurate tool segmentation is essential in computer-aided procedures. However, this task conveys challenges due to artifacts' presence and the limited training data in medical scenarios. Methods that generalize to unseen data…

Computer Vision and Pattern Recognition · Computer Science 2024-02-29 Kanyifeechukwu J. Oguine , Roger D. Soberanis-Mukul , Nathan Drenkow , Mathias Unberath

Our work targets automated analysis to quantify the growth dynamics of a population of bacilliform bacteria. We propose an innovative approach to frame-sequence tracking of deformable-cell motion by the automated minimization of a new,…

Computer Vision and Pattern Recognition · Computer Science 2022-07-12 Sorena Sarmadi , James J. Winkle , Razan N. Alnahhas , Matthew R. Bennett , Krešimir Josić , Andreas Mang , Robert Azencott

Vision foundation models have achieved remarkable progress across various image analysis tasks. In the image segmentation task, foundation models like the Segment Anything Model (SAM) enable generalizable zero-shot segmentation through…

Computer Vision and Pattern Recognition · Computer Science 2025-01-17 Xingxin He , Yifan Hu , Zhaoye Zhou , Mohamed Jarraya , Fang Liu

We present a computational live bacteria detection system that periodically captures coherent microscopy images of bacterial growth inside a 60 mm diameter agar-plate and analyzes these time-lapsed holograms using deep neural networks for…

Segment Anything Model (SAM) is a foundation model for semantic segmentation and shows excellent generalization capability with the prompts. In this empirical study, we investigate the robustness and zero-shot generalizability of the SAM in…

Image and Video Processing · Electrical Eng. & Systems 2023-05-01 An Wang , Mobarakol Islam , Mengya Xu , Yang Zhang , Hongliang Ren

Characterization of atomic-scale materials traditionally requires human experts with months to years of specialized training. Even for trained human operators, accurate and reliable characterization remains challenging when examining newly…

Fundamental models, trained on large-scale datasets and adapted to new data using innovative learning methods, have revolutionized various fields. In materials science, microstructure image segmentation plays a pivotal role in understanding…

Materials Science · Physics 2024-07-09 Xudong Ma , Yuqi Zhang , Chenchong Wang , Wei Xu

Image segmentation is a critical enabler for tasks ranging from medical diagnostics to autonomous driving. However, the correct segmentation semantics - where are boundaries located? what segments are logically similar? - change depending…

Planetary science research involves analysing vast amounts of remote sensing data, which are often costly and time-consuming to annotate and process. One of the essential tasks in this field is geological mapping, which requires identifying…

Computer Vision and Pattern Recognition · Computer Science 2023-05-16 Sahib Julka , Michael Granitzer

Segmentation models such as Segment Anything Model (SAM) and SAM2 achieve strong prompt-driven zero-shot performance. However, their training on natural images limits domain transfer to medical data. Consequently, accurate segmentation…

Computer Vision and Pattern Recognition · Computer Science 2026-04-28 Tal Grossman , Noa Cahan , Lev Ayzenberg , Hayit Greenspan

Medical image segmentation is crucial for clinical decision-making, but the scarcity of annotated data presents significant challenges. Few-shot segmentation (FSS) methods show promise but often require training on the target domain and…

Computer Vision and Pattern Recognition · Computer Science 2025-04-02 Lin Zhao , Xiao Chen , Eric Z. Chen , Yikang Liu , Terrence Chen , Shanhui Sun