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In the longest common substring (LCS) problem, we are given two strings $S$ and $T$, each of length at most $n$, and we are asked to find a longest string occurring as a fragment of both $S$ and $T$. This is a classical and well-studied…

Data Structures and Algorithms · Computer Science 2018-07-17 Amihood Amir , Panagiotis Charalampopoulos , Solon P. Pissis , Jakub Radoszewski

We consider the problem of storing a dynamic string $S$ over an alphabet $\Sigma=\{\,1,\ldots,\sigma\,\}$ in compressed form. Our representation supports insertions and deletions of symbols and answers three fundamental queries:…

Data Structures and Algorithms · Computer Science 2015-07-27 J. Ian Munro , Yakov Nekrich

Internal Pattern Matching (IPM) queries on a text $T$, given two fragments $X$ and $Y$ of $T$ such that $|Y|<2|X|$, ask to compute all exact occurrences of $X$ within $Y$. IPM queries have been introduced by Kociumaka, Radoszewski, Rytter,…

Data Structures and Algorithms · Computer Science 2025-03-06 Anouk Duyster , Tomasz Kociumaka

We explore an extension to straight-line programs (SLPs) that outperforms, for some text families, the measure $\delta$ based on substring complexity, a lower bound for most measures and compressors exploiting repetitiveness (which are…

Data Structures and Algorithms · Computer Science 2024-02-16 Gonzalo Navarro , Cristian Urbina

We present an efficient algorithm for calculating $q$-gram frequencies on strings represented in compressed form, namely, as a straight line program (SLP). Given an SLP $\mathcal{T}$ of size $n$ that represents string $T$, the algorithm…

Data Structures and Algorithms · Computer Science 2013-05-27 Keisuke Goto , Hideo Bannai , Shunsuke Inenaga , Masayuki Takeda

There are efficient dynamic programming solutions to the computation of the Edit Distance from $S\in[1..\sigma]^n$ to $T\in[1..\sigma]^m$, for many natural subsets of edit operations, typically in time within $O(nm)$ in the worst-case over…

Information Retrieval · Computer Science 2018-06-13 Jérémy Barbay , Andrés Olivares

Search applications often display shortened sentences which must contain certain query terms and must fit within the space constraints of a user interface. This work introduces a new transition-based sentence compression technique developed…

Computation and Language · Computer Science 2019-09-19 Abram Handler , Brendan O'Connor

In this paper we study the fundamental problem of maintaining a dynamic collection of strings under the following operations: concat - concatenates two strings, split - splits a string into two at a given position, compare - finds the…

Data Structures and Algorithms · Computer Science 2016-04-11 Paweł Gawrychowski , Adam Karczmarz , Tomasz Kociumaka , Jakub Łącki , Piotr Sankowski

Suffix trees are an important data structure at the core of optimal solutions to many fundamental string problems, such as exact pattern matching, longest common substring, matching statistics, and longest repeated substring. Recent lines…

Data Structures and Algorithms · Computer Science 2022-08-31 Nicola Rizzo , Alexandru I. Tomescu , Alberto Policriti

We consider dynamic algorithms for maintaining Single-Source Reachability (SSR) and approximate Single-Source Shortest Paths (SSSP) on $n$-node $m$-edge directed graphs under edge deletions (decremental algorithms). The previous fastest…

Data Structures and Algorithms · Computer Science 2018-03-02 Monika Henzinger , Sebastian Krinninger , Danupon Nanongkai

We revisit classic string problems considered in the area of parameterized complexity, and study them through the lens of dynamic data structures. That is, instead of asking for a static algorithm that solves the given instance efficiently,…

Data Structures and Algorithms · Computer Science 2022-05-03 Jędrzej Olkowski , Michał Pilipczuk , Mateusz Rychlicki , Karol Węgrzycki , Anna Zych-Pawlewicz

We consider the task of lexicographic direct access to query answers. That is, we want to simulate an array containing the answers of a join query sorted in a lexicographic order chosen by the user. A recent dichotomy showed for which…

Databases · Computer Science 2024-12-13 Karl Bringmann , Nofar Carmeli , Stefan Mengel

We study dynamic algorithms for the longest increasing subsequence (\textsf{LIS}) problem. A dynamic \textsf{LIS} algorithm maintains a sequence subject to operations of the following form arriving one by one: (i) insert an element, (ii)…

Data Structures and Algorithms · Computer Science 2021-03-11 Tomasz Kociumaka , Saeed Seddighin

It is crucial for large language models (LLMs) to follow instructions that involve multiple constraints. However, it is an unexplored area to enhance LLMs' ability to follow soft constraints. To bridge the gap, we initially design a…

Computation and Language · Computer Science 2025-06-03 Qingyu Ren , Jie Zeng , Qianyu He , Jiaqing Liang , Yanghua Xiao , Weikang Zhou , Zeye Sun , Fei Yu

We present simple and efficient algorithms for calculating $q$-gram frequencies on strings represented in compressed form, namely, as a straight line program (SLP). Given an SLP of size $n$ that represents string $T$, we present an $O(qn)$…

Data Structures and Algorithms · Computer Science 2011-07-14 Keisuke Goto , Hideo Bannai , Shunsuke Inenaga , Masayuki Takeda

A popular approach to sentence compression is to formulate the task as a constrained optimization problem and solve it with integer linear programming (ILP) tools. Unfortunately, dependence on ILP may make the compressor prohibitively slow,…

Computation and Language · Computer Science 2015-10-29 Katja Filippova , Enrique Alfonseca

The longest common substring problem consists in finding a longest string that appears as a (contiguous) substring of two input strings. We consider the dynamic variant of this problem, in which we are to maintain two dynamic strings $S$…

Data Structures and Algorithms · Computer Science 2026-04-09 Panagiotis Charalampopoulos , Paweł Gawrychowski , Karol Pokorski

The Suffix Array $SA_S[1\ldots n]$ of an $n$-length string $S$ is a lexicographically sorted array of the suffixes of $S$. The suffix array is one of the most well known and widely used data structures in string algorithms. We present a…

Data Structures and Algorithms · Computer Science 2021-12-24 Amihood Amir , Itai Boneh

Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…

Data Structures and Algorithms · Computer Science 2012-11-01 Travis Gagie , Paweł Gawrychowski , Christopher Hoobin , Simon J. Puglisi

We present an efficient algorithm for computing the LZ78 factorization of a text, where the text is represented as a straight line program (SLP), which is a context free grammar in the Chomsky normal form that generates a single string.…

Data Structures and Algorithms · Computer Science 2013-05-27 Hideo Bannai , Shunsuke Inenaga , Masayuki Takeda