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To improve the global optimization ability of traditional GEP algorithm, a Multicellular gene expression programming algorithm based on fuzzy control (Multicellular GEP Algorithm Based On Fuzzy Control, MGEP-FC) is proposed. The MGEP-FC…

Neural and Evolutionary Computing · Computer Science 2019-06-24 Chuyan Deng , Yuzhong Peng , Hongya Li , Daoqing Gong , Hao Zhang , Zhiping Liu

Materialized views can significantly improve database query performance but identifying the optimal set of views to materialize is challenging. Prior work on automating and optimizing materialized view selection has limitations in execution…

Databases · Computer Science 2024-04-01 Mahdi Manavi

A multiple objective simulation optimization algorithm named Multiple Objective Probabilistic Branch and Bound with Single Observation (MOPBnB(so)) is presented for approximating the Pareto optimal set and the associated efficient frontier…

Optimization and Control · Mathematics 2025-06-06 Hao Huang , Zelda B. Zabinsky

In machine learning, the exponential growth of data and the associated ``curse of dimensionality'' pose significant challenges, particularly with expansive yet sparse datasets. Addressing these challenges, multi-view ensemble learning (MEL)…

Molecular generation, an essential method for identifying new drug structures, has been supported by advancements in machine learning and computational technology. However, challenges remain in multi-objective generation, model…

Biomolecules · Quantitative Biology 2024-04-11 Ningfeng Liu , Jie Yu , Siyu Xiu , Xinfang Zhao , Siyu Lin , Bo Qiang , Ruqiu Zheng , Hongwei Jin , Liangren Zhang , Zhenming Liu

Manifold learning techniques have become increasingly valuable as data continues to grow in size. By discovering a lower-dimensional representation (embedding) of the structure of a dataset, manifold learning algorithms can substantially…

Neural and Evolutionary Computing · Computer Science 2020-01-31 Andrew Lensen , Mengjie Zhang , Bing Xue

Existing genetic programming (GP) methods are typically designed based on a certain representation, such as tree-based or linear representations. These representations show various pros and cons in different domains. However, due to the…

Neural and Evolutionary Computing · Computer Science 2025-05-30 Zhixing Huang , Yi Mei , Fangfang Zhang , Mengjie Zhang , Wolfgang Banzhaf

The enormous structural and chemical diversity of metal-organic frameworks (MOFs) forces researchers to actively use simulation techniques on an equal footing with experiments. MOFs are widely known for outstanding adsorption properties, so…

Materials Science · Physics 2021-11-22 Vadim V. Korolev , Yurii M. Nevolin , Thomas A. Manz , Pavel V. Protsenko

Every molecule ever synthesised can be drawn as a 2D skeletal diagram, yet in modern property prediction this universally available representation has received less focus in favour of molecular graphs, 3D conformers, or billion-parameter…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Aaditya Baranwal , Akshaj Gupta , Shruti Vyas , Yogesh S Rawat

In deep learning, Multi-Layer Perceptrons (MLPs) have once again garnered attention from researchers. This paper introduces MC-MLP, a general MLP-like backbone for computer vision that is composed of a series of fully-connected (FC) layers.…

Computer Vision and Pattern Recognition · Computer Science 2023-04-11 Zhimin Zhu , Jianguo Zhao , Tong Mu , Yuliang Yang , Mengyu Zhu

Molecular property prediction refers to the task of labeling molecules with some biochemical properties, playing a pivotal role in the drug discovery and design process. Recently, with the advancement of machine learning, deep…

Molecular Networks · Quantitative Biology 2024-01-10 Zeyu Wang , Tianyi Jiang , Jinhuan Wang , Qi Xuan

Histology analysis of the tumor micro-environment integrated with genomic assays is the gold standard for most cancers in modern medicine. This paper proposes a Gene-induced Multimodal Pre-training (GiMP) framework, which jointly…

Computer Vision and Pattern Recognition · Computer Science 2023-09-07 Ting Jin , Xingran Xie , Renjie Wan , Qingli Li , Yan Wang

Multiple geographical feature label placement (MGFLP) has been a fundamental problem in geographic information visualization for decades. The nature of label positioning is proven an NP-hard problem, where the complexity of such a problem…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-01 Mohammad Naser Lessani , Zhenlong Li , Jiqiu Deng , Zhiyong Guo

In today's construction industry, poor performance often arises due to various factors related to time, finances, and quality. These factors frequently lead to project delays and resource losses, particularly in terms of financial…

Optimization and Control · Mathematics 2024-01-24 Ali Mohammadjafari , Seyed Farid Ghannadpour , Morteza Bagherpour , Fatemeh Zandieh

We propose an effective method to improve Protein Function Prediction (PFP) utilizing hierarchical features of Gene Ontology (GO) terms. Our method consists of a language model for encoding the protein sequence and a Graph Convolutional…

Artificial Intelligence · Computer Science 2021-12-07 Kyudam Choi , Yurim Lee , Cheongwon Kim , Minsung Yoon

Determining the physicochemical properties of a protein can reveal important insights in their structure, biological functions, stability, and interactions with other molecules. Although tools for computing properties of proteins already…

Biomolecules · Quantitative Biology 2023-12-05 Gustavo Sganzerla Martinez , Mansi Dutt , Anuj Kumar , David J Kelvin

Modern multispectral feature fusion for object detection faces two critical limitations: (1) Excessive preference for local complementary features over cross-modal shared semantics adversely affects generalization performance; and (2) The…

Computer Vision and Pattern Recognition · Computer Science 2025-10-29 Jifeng Shen , Haibo Zhan , Shaohua Dong , Xin Zuo , Wankou Yang , Haibin Ling

Gene expression levels in a population vary extensively across tissues. Such heterogeneity is caused by genetic variability and environmental factors, and is expected to be linked to disease development. The abundance of experimental data…

Machine Learning · Statistics 2015-06-26 Zi Wang , Wei Yuan , Giovanni Montana

Protein secondary structure (SS) prediction is important for studying protein structure and function. When only the sequence (profile) information is used as input feature, currently the best predictors can obtain ~80% Q3 accuracy, which…

Biomolecules · Quantitative Biology 2015-12-14 Sheng Wang , Jian Peng , Jianzhu Ma , Jinbo Xu

Protein structure prediction (PSP) is computationally a very challenging problem. The challenge largely comes from the fact that the energy function that needs to be minimised in order to obtain the native structure of a given protein is…

Computational Engineering, Finance, and Science · Computer Science 2013-11-18 Mahmood A. Rashid , M. A. Hakim Newton , Md. Tamjidul Hoque , Abdul Sattar
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