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This paper introduces MISS-QA, the first benchmark specifically designed to evaluate the ability of models to interpret schematic diagrams within scientific literature. MISS-QA comprises 1,500 expert-annotated examples over 465 scientific…

Computation and Language · Computer Science 2025-07-16 Yilun Zhao , Chengye Wang , Chuhan Li , Arman Cohan

While modern visual generation models excel at creating aesthetically pleasing natural images, they struggle with producing or editing structured visuals like charts, diagrams, and mathematical figures, which demand composition planning,…

Computer Vision and Pattern Recognition · Computer Science 2026-03-05 Le Zhuo , Songhao Han , Yuandong Pu , Boxiang Qiu , Sayak Paul , Yue Liao , Yihao Liu , Jie Shao , Xi Chen , Si Liu , Hongsheng Li

With the rapid advancement of semiconductor technology, Electronic Design Automation (EDA) has become an increasingly knowledge-intensive and document-driven engineering domain. Although large language models (LLMs) have shown strong…

Machine Learning · Computer Science 2026-05-01 Lei Li , Xingwen Yu , Jianguo Ni , Junxuan Zhu , Jieqiong Zhang , Jian Zhao , Zhi Liu

Large foundation models face challenges in acquiring transferable, structured thinking abilities, especially when supervised with rigid templates or crowd-annotated instruction datasets. Unlike prior approaches, we focus on a…

Computer Vision and Pattern Recognition · Computer Science 2025-10-31 Zhe Xu , Daoyuan Chen , Zhenqing Ling , Yaliang Li , Ying Shen

Real-world multimodal learning is often hindered by missing modalities. While Incomplete Multimodal Learning (IML) has gained traction, existing methods typically rely on the unrealistic assumption of full-modal availability during training…

Computer Vision and Pattern Recognition · Computer Science 2026-05-04 Huangbiao Xu , Huanqi Wu , Xiao Ke , Yuxin Peng

Software documentation is crucial for repository comprehension. While Large Language Models (LLMs) advance documentation generation from code snippets to entire repositories, existing benchmarks have two key limitations: (1) they lack a…

Software Engineering · Computer Science 2026-04-09 Xinchen Wang , Ruida Hu , Cuiyun Gao , Pengfei Gao , Chao Peng

Medical reasoning models remain constrained by parametric knowledge and are thus susceptible to forgetting and hallucinations. DeepResearch (DR) models ground outputs in verifiable evidence from tools and perform strongly in general…

Artificial Intelligence · Computer Science 2026-02-05 Zihan Wang , Hao Wang , Shi Feng , Xiaocui Yang , Daling Wang , Yiqun Zhang , Jinghao Lin , Haihua Yang , Xiaozhong Ji

Multimodal foundation models hold significant potential for automating radiology report generation, thereby assisting clinicians in diagnosing cardiac diseases. However, generated reports often suffer from serious factual inaccuracy. In…

Computation and Language · Computer Science 2025-02-07 Liwen Sun , James Zhao , Megan Han , Chenyan Xiong

Large language models (LLMs) have shown great potential in complex reasoning tasks, yet their performance is often hampered by the scarcity of high-quality and reasoning-focused training datasets. Addressing this challenge, we propose…

Computation and Language · Computer Science 2024-05-09 Yiming Huang , Xiao Liu , Yeyun Gong , Zhibin Gou , Yelong Shen , Nan Duan , Weizhu Chen

Multimodal information, together with our knowledge, help us to understand the complex and dynamic world. Large language models (LLM) and large multimodal models (LMM), however, still struggle to emulate this capability. In this paper, we…

Computer Vision and Pattern Recognition · Computer Science 2024-05-07 Yuanhan Zhang , Kaichen Zhang , Bo Li , Fanyi Pu , Christopher Arif Setiadharma , Jingkang Yang , Ziwei Liu

Large Language Models (LLMs) have shown impressive capabilities in contextual understanding and reasoning. However, evaluating their performance across diverse scientific domains remains underexplored, as existing benchmarks primarily focus…

Computation and Language · Computer Science 2025-05-22 Jing Yu , Yuqi Tang , Kehua Feng , Mingyang Rao , Lei Liang , Zhiqiang Zhang , Mengshu Sun , Wen Zhang , Qiang Zhang , Keyan Ding , Huajun Chen

Advances in single-cell sequencing have enabled high-resolution profiling of diverse molecular modalities, while integrating unpaired multi-omics single-cell data remains challenging. Existing approaches either rely on pair information or…

Quantitative Methods · Quantitative Biology 2026-01-21 Jianle Sun , Chaoqi Liang , Ran Wei , Peng Zheng , Lei Bai , Wanli Ouyang , Hongliang Yan , Peng Ye

Retrieval-Augmented Generation (RAG) systems are widely adopted in knowledge-intensive NLP tasks, but current evaluations often overlook the structural complexity and multi-step reasoning required in real-world scenarios. These benchmarks…

Computation and Language · Computer Science 2025-12-16 Jeongsoo Lee , Daeyong Kwon , Kyohoon Jin

Multimodal reasoning remains a fundamental challenge in artificial intelligence. Despite substantial advances in text-based reasoning, even state-of-the-art models such as GPT-o3 struggle to maintain strong performance in multimodal…

Computation and Language · Computer Science 2025-09-09 Hao Liang , Ruitao Wu , Bohan Zeng , Junbo Niu , Wentao Zhang , Bin Dong

Long-form mental health assessments pose unique challenges for large language models (LLMs), which often exhibit hallucinations or inconsistent reasoning when handling extended, domain-specific contexts. We introduce Stacked Multi-Model…

Computation and Language · Computer Science 2025-09-22 Jinwen Tang , Qiming Guo , Wenbo Sun , Yi Shang

The exponential growth of AI in science necessitates efficient and scalable solutions for retrieving and preserving research information. Here, we present a tool for the development of a customized question-answer (QA) dataset, called…

Information Retrieval · Computer Science 2025-02-25 Qiming Liu , Zhongzheng Niu , Siting Liu , Mao Tian

Deep language models learning a hierarchical representation proved to be a powerful tool for natural language processing, text mining and information retrieval. However, representations that perform well for retrieval must capture semantic…

Information Retrieval · Computer Science 2019-05-24 Tolgahan Cakaloglu , Xiaowei Xu

Foundation models have emerged as a powerful approach for processing electronic health records (EHRs), offering flexibility to handle diverse medical data modalities. In this study, we present a comprehensive benchmark that evaluates the…

Machine Learning · Computer Science 2025-07-22 Kunyu Yu , Rui Yang , Jingchi Liao , Siqi Li , Huitao Li , Irene Li , Yifan Peng , Rishikesan Kamaleswaran , Nan Liu

Multimodal retrieval-augmented Generation (MM-RAG) is a key approach for applying large language models (LLMs) and agents to real-world knowledge bases, yet current evaluations are fragmented -- focusing on either text or images in…

Computation and Language · Computer Science 2026-01-06 Xiangyu Peng , Can Qin , Zeyuan Chen , Ran Xu , Caiming Xiong , Chien-Sheng Wu

In response to the growing complexity and volume of scientific literature, this paper introduces the LLMs4Synthesis framework, designed to enhance the capabilities of Large Language Models (LLMs) in generating high-quality scientific…

Computation and Language · Computer Science 2024-09-30 Hamed Babaei Giglou , Jennifer D'Souza , Sören Auer
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