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DNA storage is a promising archival data storage solution to today's big data problem. A DNA storage system encodes and stores digital data with synthetic DNA sequences and decodes DNA sequences back to digital data via sequencing. For…

Emerging Technologies · Computer Science 2024-03-25 Yixun Wei , Bingzhe Li , David Du

Motivated by DNA storage in living organisms, and by known biological mutation processes, we study the reverse-complement string-duplication system. We fully classify the conditions under which the system has full expressiveness, for all…

Information Theory · Computer Science 2021-12-23 Eyar Ben-Tolila , Moshe Schwartz

Deep neural network models, though very powerful and highly successful, are computationally expensive in terms of space and time. Recently, there have been a number of attempts on binarizing the network weights and activations. This greatly…

Neural and Evolutionary Computing · Computer Science 2018-05-11 Lu Hou , Quanming Yao , James T. Kwok

While binary neural networks (BNNs) offer significant benefits in terms of speed, memory and energy, they encounter substantial accuracy degradation in challenging tasks compared to their real-valued counterparts. Due to the binarization of…

Computer Vision and Pattern Recognition · Computer Science 2025-04-01 Xulong Shi , Caiyi Sun , Zhi Qi , Liu Hao , Xiaodong Yang

Deoxyribonucleic acid (DNA) has emerged as a promising building block for next-generation ultra-high density storage devices. Although DNA has high durability and extremely high density in nature, its potential as the basis of storage…

Emerging Technologies · Computer Science 2023-04-28 Arpan De , Hashem Mohammad , Yiren Wang , Rajkumar Kubendran , Arindam K. Das , M. P. Anantram

Motivation: Deep learning architectures have recently demonstrated their power in predicting DNA- and RNA-binding specificities. Existing methods fall into three classes: Some are based on Convolutional Neural Networks (CNNs), others use…

Machine Learning · Computer Science 2019-01-31 Ameni Trabelsi , Mohamed Chaabane , Asa Ben Hur

In numerous applications, binary reactions or event counts are observed and stored within high-order tensors. Tensor decompositions (TDs) serve as a powerful tool to handle such high-dimensional and sparse data. However, many traditional…

Machine Learning · Computer Science 2024-01-17 Zerui Tao , Toshihisa Tanaka , Qibin Zhao

Deep neural networks (DNN) have shown remarkable success in a variety of machine learning applications. The capacity of these models (i.e., number of parameters), endows them with expressive power and allows them to reach the desired…

Machine Learning · Computer Science 2022-04-12 Arturo Marban , Daniel Becking , Simon Wiedemann , Wojciech Samek

A practical deep neural network's (DNN) evaluation involves thousands of multiply-and-accumulate (MAC) operations. To extend DNN's superior inference capabilities to energy constrained devices, architectures and circuits that minimize…

Emerging Technologies · Computer Science 2020-08-04 Aditya Shukla

Repetitive DNA sequences underpin genome architecture and evolutionary processes, yet they remain challenging to classify accurately. Terrier is a deep learning model designed to overcome these challenges by classifying repetitive DNA…

Genomics · Quantitative Biology 2025-07-10 Robert Turnbull , Neil D. Young , Edoardo Tescari , Lee F. Skerratt , Tiffany A. Kosch

DNA is an attractive candidate for data storage. Its millennial durability and nanometer scale offer exceptional data density and longevity. Its relevance to medical applications also drives advances in DNA-related biotechnology. To protect…

Information Theory · Computer Science 2025-11-25 Yu-Ting Lin , Hsin-Po Wang , Venkatesan Guruswami

Deep convolutional neural networks (CNNs) are usually over-parameterized, which cannot be easily deployed on edge devices such as mobile phones and smart cameras. Existing works used to decrease the number or size of requested convolution…

Computer Vision and Pattern Recognition · Computer Science 2019-08-07 Kai Han , Yunhe Wang , Yixing Xu , Chunjing Xu , Dacheng Tao , Chang Xu

The development of novel transparent conducting materials (TCMs) is essential for enhancing the performance and reducing the cost of next-generation devices such as solar cells and displays. In this research, we focus on the…

Materials Science · Physics 2025-08-01 Daisuke Makino , Tatsuya Goto , Yoshinori Suga

In this work, we present a class of new designs for reversible binary and BCD adder circuits. The proposed designs are primarily optimized for the number of ancilla inputs and the number of garbage outputs and are designed for possible best…

Quantum Physics · Physics 2017-12-08 Himanshu Thapliyal , Nagarajan Ranganathan

Domain specific neural network accelerators have garnered attention because of their improved energy efficiency and inference performance compared to CPUs and GPUs. Such accelerators are thus well suited for resource-constrained embedded…

Machine Learning · Computer Science 2021-07-13 Febin P. Sunny , Asif Mirza , Mahdi Nikdast , Sudeep Pasricha

The ability to significantly enhance energy transfer processes at the nanoscale requires the simultaneous optimization of molecular-scale orientation and macroscopic photonic enhancement between multiple quantum emitters. However, achieving…

How can we predict missing values in multi-dimensional data (or tensors) more accurately? The task of tensor completion is crucial in many applications such as personalized recommendation, image and video restoration, and link prediction in…

Machine Learning · Computer Science 2021-08-24 Sejoon Oh , Sungchul Kim , Ryan A. Rossi , Srijan Kumar

We present a memory and computation efficient ternary weight networks (TWNs) - with weights constrained to +1, 0 and -1. The Euclidian distance between full (float or double) precision weights and the ternary weights along with a scaling…

Computer Vision and Pattern Recognition · Computer Science 2022-11-22 Fengfu Li , Bin Liu , Xiaoxing Wang , Bo Zhang , Junchi Yan

Leveraging the high density and energy efficiency of Compute-In-Memory (CIM) crossbar-based Deep Neural Network (DNN) accelerators requires optimal Design Space Exploration (DSE), which becomes increasingly challenging as complex models for…

Emerging Technologies · Computer Science 2026-05-12 Arnob Saha , Bibhas Manna , Nikhil Kotikalapudi , Md Zesun Ahmed Mia , Rahul Kumar , Madhavan Swaminathan , Abhronil Sengupta

Synthetic sequence-controlled polymers promise to transform polymer science by combining the chemical versatility of synthetic polymers with the precise sequence-mediated functionality of biological proteins. However, design of these…

Materials Science · Physics 2025-07-30 Md Mushfiqul Islam , Nishat N. Labiba , Lawrence O. Hall , David S. Simmons