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DBSCAN is a typically used clustering algorithm due to its clustering ability for arbitrarily-shaped clusters and its robustness to outliers. Generally, the complexity of DBSCAN is O(n^2) in the worst case, and it practically becomes more…

Databases · Computer Science 2018-01-23 Thapana Boonchoo , Xiang Ao , Qing He

The problem of identifying geometric structure in heterogeneous, high-dimensional data is a cornerstone of representation learning. While there exists a large body of literature on the embeddability of canonical graphs, such as lattices or…

Machine Learning · Computer Science 2019-10-15 Melanie Weber

Modern data analytical workloads often need to run queries over a large number of tables. An optimal query plan for such queries is crucial for being able to run these queries within acceptable time bounds. However, with queries involving…

Databases · Computer Science 2022-03-02 Riccardo Mancini , Srinivas Karthik , Bikash Chandra , Vasilis Mageirakos , Anastasia Ailamaki

Determining the interaction partners among protein/domain families poses hard computational problems, in particular in the presence of paralogous proteins. Available approaches aim to identify interaction partners among protein/domain…

Populations and Evolution · Quantitative Biology 2015-01-14 Iman Hajirasouliha , Alexander Schönhuth , David Juan , Alfonso Valencia , S. Cenk Sahinalp

Efficient management of RDF data plays an important role in successfully understanding and fast querying data. Although the current approaches of indexing in RDF Triples such as property tables and vertically partitioned solved many issues;…

Databases · Computer Science 2014-09-17 Awny Sayed , Amal Almaqrashi

The advent of highly accurate protein structure prediction methods has fueled an exponential expansion of the protein structure database. Consequently, there is a rising demand for rapid and precise structural homolog search. Traditional…

Biomolecules · Quantitative Biology 2023-12-01 Yuan Liu , Hong-Bin Shen

The computational resources required to train a model have been increasing since the inception of deep networks. Training neural networks on massive datasets have become a challenging and time-consuming task. So, there arises a need to…

Machine Learning · Computer Science 2022-09-07 Devvrat Joshi , Janvi Thakkar , Siddharth Soni , Shril Mody , Rohan Patil , Nipun Batra

Similarity searching finds application in a wide variety of domains including multilingual databases, computational biology, pattern recognition and text retrieval. Similarity is measured in terms of a distance function, edit distance, in…

Databases · Computer Science 2007-05-23 Girish Motwani , Sandhya G. Nair

We describe a simple and fast algorithm for identifying friends-of-friends features and prove its correctness. The algorithm avoids unnecessary expensive neighbor queries, uses minimal memory overhead, and rejects slowdown in high…

Instrumentation and Methods for Astrophysics · Physics 2017-06-02 Yu Feng , Chirag Modi

Finding optimal matchings in dense graphs is of general interest and of particular importance in social, transportation and biological networks. While developing optimal solutions for various matching problems is important, the running…

Data Structures and Algorithms · Computer Science 2020-11-16 Nitish K. Panigrahy , Prithwish Basu , Don Towsley

Exploiting geometric structure to improve the asymptotic complexity of discrete assignment problems is a well-studied subject. In contrast, the practical advantages of using geometry for such problems have not been explored. We implement…

Computational Geometry · Computer Science 2016-06-13 Michael Kerber , Dmitriy Morozov , Arnur Nigmetov

Efficient join processing is one of the most fundamental and well-studied tasks in database research. In this work, we examine algorithms for natural join queries over many relations and describe a novel algorithm to process these queries…

Databases · Computer Science 2012-03-12 Hung Q. Ngo , Ely Porat , Christopher Ré , Atri Rudra

A geometrical pattern is a set of points with all pairwise distances (or, more generally, relative distances) specified. Finding matches to such patterns has applications to spatial data in seismic, astronomical, and transportation…

Databases · Computer Science 2017-03-09 Fabio Porto , Amir Khatibi , João R. Nobre , Eduardo Ogasawara , Patrick Valduriez , Dennis Shasha

A popular testbed for deep learning has been multimodal recognition of human activity or gesture involving diverse inputs such as video, audio, skeletal pose and depth images. Deep learning architectures have excelled on such problems due…

Neural and Evolutionary Computing · Computer Science 2017-07-05 Dhanesh Ramachandram , Michal Lisicki , Timothy J. Shields , Mohamed R. Amer , Graham W. Taylor

Modern analytical workloads increasingly combine relational data with array-valued attributes. While columnar database systems efficiently process such workloads, their ability to optimize queries that interleave relational operators with…

Databases · Computer Science 2026-04-03 Maroua Zeblah , Etienne Couritas , Sarah Chlyah , Pierre Genevès , Nils Gesbert , Nabil Layaïda

Federated learning has attracted significant attention as a privacy-preserving framework for training personalised models on multi-source heterogeneous data. However, most existing approaches are unable to handle scenarios where subgroup…

Methodology · Statistics 2025-10-14 Changxin Yang , Zhongyi Zhu , Heng Lian

We introduce a new spatial data structure for high dimensional data called the \emph{approximate principal direction tree} (APD tree) that adapts to the intrinsic dimension of the data. Our algorithm ensures vector-quantization accuracy…

Machine Learning · Computer Science 2012-06-22 Mark McCartin-Lim , Andrew McGregor , Rui Wang

Graph pattern matching (e.g., finding all cycles and cliques) has become an important component in many critical domains such as social networks, biology, and cyber-security. This development motivated research to develop faster algorithms…

Databases · Computer Science 2019-05-21 Oren Kalinsky , Benny Kimelfeld , Yoav Etsion

As data are increasingly modeled as graphs for expressing complex relationships, the tree pattern query on graph-structured data becomes an important type of queries in real-world applications. Most practical query languages, such as XQuery…

Databases · Computer Science 2015-03-19 Qiang Zeng , Xiaorui Jiang , Hai Zhuge

Over the past a few years, research and development has made significant progresses on big data analytics. A fundamental issue for big data analytics is the efficiency. If the optimal solution is unable to attain or not required or has a…

Databases · Computer Science 2019-01-03 Shuai Ma , Jinpeng Huai