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Many real-world complex systems, such as epidemic spreading networks and ecosystems, can be modeled as networked dynamical systems that produce multivariate time series. Learning the intrinsic dynamics from observational data is pivotal for…

Machine Learning · Computer Science 2024-12-30 Yanna Ding , Zijie Huang , Malik Magdon-Ismail , Jianxi Gao

The non-trivial topological features in the energy band of non-Hermitian systems provide promising pathways to achieve robust physical behaviors in classical or quantum open systems. A key topological feature, unique to non-Hermitian…

We develop the topological band theory for systems described by non-Hermitian Hamiltonians, whose energy spectra are generally complex. After generalizing the notion of gapped band structures to the non-Hermitian case, we classify "gapped"…

Mesoscale and Nanoscale Physics · Physics 2018-04-11 Huitao Shen , Bo Zhen , Liang Fu

The new concept of multilevel network is introduced in order to embody some topological properties of complex systems with structures in the mesoscale which are not completely captured by the classical models. This new model, which…

The recent discovery of universal principles underlying many complex networks occurring across a wide range of length scales in the biological world has spurred physicists in trying to understand such features using techniques from…

Biological Physics · Physics 2015-05-13 Sitabhra Sinha

In this work, we study the topological transition on the associated networks in a model proposed by Saeedian et al. (Scientific Reports 2019 9:9726), which considers a coupled dynamics of node and link states. Our goal was to better…

Physics and Society · Physics 2022-04-05 Paulo Freitas Gomes , Henrique Almeida Fernandes , Ariadne de Andrade Costa

The trophic levels of nodes in directed networks can reveal their functional properties. Moreover, the trophic coherence of a network, defined in terms of trophic levels, is related to properties such as cycle structure, stability and…

Physics and Society · Physics 2020-01-16 R. S. MacKay , S. Johnson , B. Sansom

To provide a phenomenological theory for the various interesting transitions in restructuring networks we employ a statistical mechanical approach with detailed balance satisfied for the transitions between topological states. This enables…

Statistical Mechanics · Physics 2007-05-23 Imre Derenyi , Illes Farkas , Gergely Palla , Tamas Vicsek

Topology identification and inference of processes evolving over graphs arise in timely applications involving brain, transportation, financial, power, as well as social and information networks. This chapter provides an overview of graph…

Signal Processing · Electrical Eng. & Systems 2025-12-12 Gonzalo Mateos , Yanning Shen , Georgios B. Giannakis , Ananthram Swami

One explanation for the impressive recent boom in network theory might be that it provides a promising tool for an understanding of complex systems. Network theory is mainly focusing on discrete large-scale topological structures rather…

Statistical Mechanics · Physics 2015-06-25 Stefan Thurner

By dividing potential energy landscapes into basins of attractions surrounding minima and linking those basins that are connected by transition state valleys, a network description of energy landscapes naturally arises. These networks are…

Statistical Mechanics · Physics 2007-05-23 Jonathan P. K. Doye , Claire P. Massen

We introduce a family of complex networks that interpolates between the Apollonian network and its binary version, recently introduced in [Phys. Rev. E \textbf{107}, 024305 (2023)], via random removal of nodes. The dilution process allows…

Disordered Systems and Neural Networks · Physics 2024-05-28 Eduardo M. K. Souza , Guilherme M. A. Almeida

The topology of any complex system is key to understanding its structure and function. Fundamentally, algebraic topology guarantees that any system represented by a network can be understood through its closed paths. The length of each path…

Methodology · Statistics 2017-05-17 Pierre-André G. Maugis , Sofia C. Olhede , Patrick J. Wolfe

Here we consider the topological properties of the integrated networks emerging from the activity driven model [Perra at al. Sci. Rep. 2, 469 (2012)], a temporal network model recently proposed to explain the power-law degree distribution…

Statistical Mechanics · Physics 2015-06-15 Michele Starnini , Romualdo Pastor Satorras

The network of interactions in complex systems, strongly influences their resilience, the system capability to resist to external perturbations or structural damages and to promptly recover thereafter. The phenomenon manifests itself in…

Physics and Society · Physics 2018-04-11 Malbor Asllani , Timoteo Carletti

Topological photonics provides a robust and flexible platform for controlling light, enabling functionalities such as backscattering-immune edge transport and slow-light propagation. In this work, we design and characterize photonic…

Optics · Physics 2025-05-12 Ondřej Novák , Martin Veis , Gervasi Herranz

Using group theoretic and topological concepts, together with tunneling phenomena, we geometrically design interfacial wave networks that contain splitters which partition energy in 2, 3, 4 or 5 directions. This enriches the valleytronics…

Mesoscale and Nanoscale Physics · Physics 2018-12-19 Mehul Makwana , Richard Craster

Multilayer networks have permeated all the sciences as a powerful mathematical abstraction for interdependent heterogenous complex systems such as multimodal brain connectomes, transportation, ecological systems, and scientific…

Algebraic Topology · Mathematics 2023-06-28 Elkaïoum M. Moutuou , Obaï B. K. Ali , Habib Benali

Thresholding--the pruning of nodes or edges based on their properties or weights--is an essential preprocessing tool for extracting interpretable structure from complex network data, yet existing methods face several key limitations.…

Social and Information Networks · Computer Science 2025-10-07 Adam Schroeder , Russell Funk , Jingyi Guan , Taylor Okonek , Lori Ziegelmeier

Complex dynamical systems are often modeled as networks, with nodes representing dynamical units which interact through the network's links. Gene regulatory networks, responsible for the production of proteins inside a cell, are an example…

Statistical Mechanics · Physics 2009-09-30 Zoran Levnajić