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AI-assisted developer services are increasingly embedded in modern IDEs, yet enterprises must ensure these tools operate within existing identity, access control, and governance requirements. The Model Context Protocol (MCP) enables AI…

Software Engineering · Computer Science 2026-01-07 Manideep Reddy Chinthareddy

Since the introduction of the Model Context Protocol (MCP), the number of available tools for Large Language Models (LLMs) has increased significantly. These task-specific tool sets offer an alternative to general-purpose tools such as web…

Computation and Language · Computer Science 2025-12-12 Reza Esfandiarpoor , Vishwas Suryanarayanan , Stephen H. Bach , Vishal Chowdhary , Anthony Aue

Large language model (LLM)-based AI agents extend LLM capabilities by enabling access to tools such as data sources, APIs, search engines, code sandboxes, and even other agents. While this empowers agents to perform complex tasks, LLMs may…

Software Engineering · Computer Science 2026-01-14 Aarya Doshi , Yining Hong , Congying Xu , Eunsuk Kang , Alexandros Kapravelos , Christian Kästner

Bioinformatics web servers are critical resources in modern biomedical research, facilitating interactive exploration of datasets through custom-built interfaces with rich visualization capabilities. However, this human-centric design…

Other Quantitative Biology · Quantitative Biology 2026-02-25 Matthias Flotho , Ian Ferenc Diks , Philipp Flotho , Leidy-Alejandra G. Molano , Pascal Hirsch , Andreas Keller

Large Language Model (LLM)-based agents have demonstrated remarkable capabilities in reasoning, planning, and tool usage. The recently proposed Model Context Protocol (MCP) has emerged as a unifying framework for integrating external tools…

Cryptography and Security · Computer Science 2025-12-03 Yuanhe Zhang , Weiliu Wang , Zhenhong Zhou , Kun Wang , Jie Zhang , Li Sun , Yang Liu , Sen Su

The Model Context Protocol (MCP) enables large language models (LLMs) to access external resources on demand. While commonly assumed to enhance performance, how LLMs actually leverage this capability remains poorly understood. We introduce…

Artificial Intelligence · Computer Science 2025-08-19 Wei Song , Haonan Zhong , Ziqi Ding , Jingling Xue , Yuekang Li

This survey investigates how classical software design patterns can enhance the reliability and scalability of communication in Large Language Model (LLM)-driven agentic AI systems, focusing particularly on the Model Context Protocol (MCP).…

Software Engineering · Computer Science 2026-05-25 Anjana Sarkar , Soumyendu Sarkar

Engineering more secure software has become a critical challenge in the cyber world. It is very important to develop methodologies, techniques, and tools for developing secure software. To develop secure software, software developers need…

Software Engineering · Computer Science 2023-02-14 Nicholas Lasky , Benjamin Hallis , Mounika Vanamala , Rushit Dave , Jim Seliya

The integration of large language models (LLMs) into scientific research is accelerating the realization of autonomous ``AI Scientists.'' While recent advancements have empowered AI to formulate hypotheses and design experiments, a critical…

Quantum Physics · Physics 2026-05-27 Masaki Shiraishi , Ikko Hamamura , Tatsuya Ishigaki , Tadashi Kadowaki

Background: Large language models (LLMs) show promise in medicine, but their deployment in hospitals is limited by restricted access to electronic health record (EHR) systems. The Model Context Protocol (MCP) enables integration between…

Artificial Intelligence · Computer Science 2025-09-22 Kanato Masayoshi , Masahiro Hashimoto , Ryoichi Yokoyama , Naoki Toda , Yoshifumi Uwamino , Shogo Fukuda , Ho Namkoong , Masahiro Jinzaki

The integration of Large Language Models (LLMs) with Internet-of-Things (IoT) systems faces significant challenges in hardware heterogeneity and control complexity. The Model Context Protocol (MCP) emerges as a critical enabler, providing…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-03 Ningyuan Yang , Guanliang Lyu , Mingchen Ma , Yiyi Lu , Yiming Li , Zhihui Gao , Hancheng Ye , Jianyi Zhang , Tingjun Chen , Yiran Chen

The Model Context Protocol (MCP) has unified the interface between Large Language Models (LLMs) and external tools, yet a fundamental gap remains in how agents conceptualize the environments within which they operate. Current paradigms are…

Artificial Intelligence · Computer Science 2026-05-12 Giridhar Ganapavarapu , Dhaval Patel

Current LLM agents are proficient at calling isolated APIs but struggle with the "last mile" of commercial software automation. In real-world scenarios, tools are not independent; they are atomic, interdependent, and prone to environmental…

Artificial Intelligence · Computer Science 2026-05-21 Yuanyang Li , Xue Yang , Longyue Wang , Weihua Luo , Hongyang Chen

In the rapidly evolving digital landscape, where organisations are increasingly vulnerable to cybersecurity threats, Cybersecurity Capability Maturity Models (CCMMs) emerge as pivotal tools in enhancing organisational cybersecurity posture.…

Cryptography and Security · Computer Science 2024-08-30 Lasini Liyanage , Nalin Asanka Gamagedara Arachchilage , Giovanni Russello

The rapid expansion of interconnected devices, autonomous systems, and AI applications has created severe fragmentation in adaptive transport systems, where diverse protocols and context sources remain isolated. This survey provides the…

The Model Context Protocol (MCP) enables Large Language Models (LLMs) to interact with external tools via tool descriptors, thereby extending their capabilities for task execution, autonomous decision-making, and multi-agent coordination.…

Cryptography and Security · Computer Science 2026-05-22 Saeid Jamshidi , Arghavan Moradi Dakhel , Kawser Wazed Nafi , Foutse Khomh

The MCP Solver bridges Large Language Models (LLMs) with symbolic solvers through the Model Context Protocol (MCP), an open-source standard for AI system integration. Providing LLMs access to formal solving and reasoning capabilities…

Artificial Intelligence · Computer Science 2025-04-08 Stefan Szeider

Model Context Protocol (MCP) enables agents to interact with external tools, yet empirical research on MCP is hindered by the lack of large-scale, accessible datasets. We present MCPZoo, the largest and most comprehensive dataset of MCP…

Cryptography and Security · Computer Science 2025-12-29 Mengying Wu , Pei Chen , Geng Hong , Baichao An , Jinsong Chen , Binwang Wan , Xudong Pan , Jiarun Dai , Min Yang

To standardize interactions between LLM-based agents and their environments, the Model Context Protocol (MCP) was proposed and has since been widely adopted. However, integrating external tools expands the attack surface, exposing agents to…

Cryptography and Security · Computer Science 2026-01-13 Ruiqi Li , Zhiqiang Wang , Yunhao Yao , Xiang-Yang Li

Secure Multi-Party Computation (MPC) is an important enabling technology for data privacy in modern distributed applications. Currently, proof methods for low-level MPC protocols are primarily manual and thus tedious and error-prone, and…

Cryptography and Security · Computer Science 2024-07-24 Christian Skalka , Joseph P. Near
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