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Artificial Chemistries (ACs) are symbolic chemical metaphors for the exploration of Artificial Life, with specific focus on the problem of biogenesis or the origin of life. This paper presents authors thoughts towards defining a unified…

Artificial Intelligence · Computer Science 2009-01-06 Janrdan Misra

Using quantum systems to efficiently solve quantum chemistry problems is one of the long-sought applications of near-future quantum technologies. In a recent work, ultra-cold fermionic atoms have been proposed for these purposes by showing…

Quantum Physics · Physics 2021-04-16 Javier Argüello-Luengo , Tao Shi , Alejandro González-Tudela

An algebraic technique adapted to the problems of the fundamental theoretical physics is presented. The exposition is an elaboration and an extension of the methods proposed in previous works by the aut

Rings and Algebras · Mathematics 2018-03-14 Victor Zharinov

Fuzzy set theory opens new vistas in computability theory and here I show this by defining a new computational metaphor--the fuzzy chemical metaphor. This metaphor is an extension of the chemical metaphor. In particular, I introduce the…

Formal Languages and Automata Theory · Computer Science 2009-03-23 Apostolos Syropoulos

Quantum Algebras (q-algebras) are used to describe interactions between fermions and bosons. Particularly, the concept of a su_q(2) dynamical symmetry is invoked in order to reproduce the ground state properties of systems of fermions and…

Nuclear Theory · Physics 2009-11-07 A. Ballesteros , O. Civitarese , F. J. Herranz , M. Reboiro

This paper proposes to use dialgebras to specify the semantics of interactive systems in a natural way. Dialgebras are a conservative extension of coalgebras. In this categorical model, from the point of view that we provide, the notions of…

Programming Languages · Computer Science 2011-08-03 Vincenzo Ciancia

Artificial Chemistries (ACs) are symbolic chemical metaphors for the exploration of Artificial Life, with specific focus on the origin of life. In this work we define a P system based artificial graph chemistry to understand the principles…

Neural and Evolutionary Computing · Computer Science 2009-01-06 Janardan Misra

The objectives of this research work which is intimately related to pattern discovery and management are threefold: (i) handle the problem of pattern manipulation by defining operations on patterns, (ii) study the problem of enriching and…

Databases · Computer Science 2009-02-25 Rokia Missaoui , Leonard Kwuida , Mohamed Quafafou , Jean Vaillancourt

An explanatory model for the emergence of evolvable units must display emerging structures that (1) preserve themselves in time (2) self-reproduce and (3) tolerate a certain amount of variation when reproducing. To tackle this challenge,…

Adaptation and Self-Organizing Systems · Physics 2020-06-22 Germán Kruszewski , Tomas Mikolov

In this paper we define a class of polynomial functors suited for constructing coalgebras representing processes in which uncertainty plays an important role. In these polynomial functors we include upper and lower probability measures,…

Logic in Computer Science · Computer Science 2024-04-02 Andrés Gallardo , Ignacio Viglizzo

The algebraic analysis of social systems, or algebraic social network analysis, refers to a collection of methods designed to extract information about the structure of a social system represented as a directed graph. Central among these…

Social and Information Networks · Computer Science 2026-03-03 Nima Motamed , Nina Otter , Emily Roff

We advocate the development of a discipline of interacting with and extracting information from models, both mathematical (e.g. game-theoretic ones) and computational (e.g. agent-based models). We outline some directions for the development…

Multiagent Systems · Computer Science 2021-02-24 Gabriel Istrate

We develop a functorial approach to the study of $n$-abelian categories by reformulating their axioms in terms of their categories of finitely presented functors. Such an approach allows the use of classical homological algebra and…

Category Theory · Mathematics 2025-10-14 Vitor Gulisz

The behavior of an atom in a molecule, liquid or solid is governed by the force it experiences. If the dependence of this vectorial force on the atomic chemical environment can be $learned$ efficiently with high-fidelity from benchmark…

Materials Science · Physics 2015-10-28 Venkatesh Botu , Rampi Ramprasad

In this master's thesis, we rigorously develop two frameworks of relational composition of systems using tools from category theory. The first framework addresses port-Hamiltonian systems, which are dynamical systems whose dynamics are…

Category Theory · Mathematics 2023-10-11 Owen Lynch

We show that differential calculus (in its usual form, or in the general form of topological differential calculus) can be fully imdedded into a functor category (functors from a small category of anchord tangent algebras to anchored sets).…

Algebraic Geometry · Mathematics 2021-03-25 Wolfgang Bertram , Jérémy Haut

We study fibrations arising from indexed categories of the following form: fix two categories $\mathcal{A},\mathcal{X}$ and a functor $F : \mathcal{A} \times \mathcal{X} \longrightarrow\mathcal{X} $, so that to each $F_A=F(A,-)$ one can…

For a nice-enough category $\mathcal{C}$, we construct both the morphism category ${\rm H}(\mathcal{C})$ of $\mathcal{C}$ and the category ${\rm mod}\mbox{-}\mathcal{C}$ of all finitely presented contravariant additive functors over…

Representation Theory · Mathematics 2023-08-01 Rasool Hafezi , Hossein Eshraghi

In this paper, we introduce product interactions, an algebraic formalism in which neural network layers are constructed from compositions of a multiplication operator defined over suitable algebras. Product interactions provide a principled…

Machine Learning · Computer Science 2026-02-04 Haonan Dong , Chun-Wun Cheng , Angelica I. Aviles-Rivero

Large complexes of classical particles play central roles in biology, in polymer physics, and in other disciplines. However, physics currently lacks mathematical methods for describing such complexes in terms of component particles,…

Quantitative Methods · Quantitative Biology 2016-03-25 Muir J. Morrison , Justin B. Kinney
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