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Understanding and reasoning on the large-scale scientific literature is a crucial touchstone for large language model (LLM) based agents. However, existing works are mainly restricted to tool-free tasks within single papers, largely due to…

Artificial Intelligence · Computer Science 2026-02-02 Daoyu Wang , Mingyue Cheng , Shuo Yu , Zirui Liu , Ze Guo , Xin Li , Qi Liu

Code reproduction is a cornerstone of scientific validity, yet it remains a formidable challenge in computer networking research due to the scarcity of open-source implementations and the complexity of heterogeneous system architectures.…

Networking and Internet Architecture · Computer Science 2026-02-17 Yining Jiang , Yunxin Xu , Wenyun Xu , Yufan Zhu , Tangtang He , Haiying Huang , Letian Zhu , Qingyu Song , Qiang Su , Lizhao You , Lu Tang , Wanjin Feng , Yuchao Zhang , Linghe Kong , Qiao Xiang , Jiwu Shu

Large language models (LLMs) have exhibited remarkable capabilities across various domains. The ability to call external tools further expands their capability to handle real-world tasks. However, LLMs often follow an opaque reasoning…

Machine Learning · Computer Science 2025-11-20 Ruixin Zhang , Jon Donnelly , Zhicheng Guo , Ghazal Khalighinejad , Haiyang Huang , Alina Jade Barnett , Cynthia Rudin

Task automation has been greatly empowered by the recent advances in Large Language Models (LLMs) via Python code, where the tasks ranging from software engineering development to general-purpose reasoning. While current benchmarks have…

The development of autonomous machine learning (ML) agents capable of end-to-end data science workflows represents a significant frontier in artificial intelligence. These agents must orchestrate complex sequences of data analysis, feature…

Machine Learning · Computer Science 2026-02-24 Yaswanth Chittepu , Raghavendra Addanki , Tung Mai , Anup Rao , Branislav Kveton

Large Language Models (LLMs) have shown promise in automated code generation but typically excel only in simpler tasks such as generating standalone code units. Real-world software development, however, often involves complex code…

Software Engineering · Computer Science 2024-08-12 Kechi Zhang , Jia Li , Ge Li , Xianjie Shi , Zhi Jin

Large language models (LLMs) achieve remarkable advancements by leveraging tools to interact with environments, a critical step toward generalized AI. However, the standard supervised fine-tuning (SFT) approach, which relies on large-scale…

Computation and Language · Computer Science 2025-08-27 Junjie Ye , Yilong Wu , Sixian Li , Yuming Yang , Zhiheng Xi , Tao Gui , Qi Zhang , Xuanjing Huang , Peng Wang , Zhongchao Shi , Jianping Fan , Zhengyin Du

We introduce tulip agent, an architecture for autonomous LLM-based agents with Create, Read, Update, and Delete access to a tool library containing a potentially large number of tools. In contrast to state-of-the-art implementations, tulip…

Artificial Intelligence · Computer Science 2024-08-01 Felix Ocker , Daniel Tanneberg , Julian Eggert , Michael Gienger

As LLM agents are increasingly deployed with large libraries of reusable skills, selecting the right skill for a user request has become a critical systems challenge. In small libraries, users may invoke skills explicitly by name, but this…

Artificial Intelligence · Computer Science 2026-05-08 Hongcheol Cho , Ryangkyung Kang , Youngeun Kim

As coding challenges become more complex, recent advancements in Large Language Models (LLMs) have led to notable successes, such as achieving a 94.6\% solve rate on the HumanEval benchmark. Concurrently, there is an increasing commercial…

Software Engineering · Computer Science 2023-12-19 Douglas Schonholtz

Tool learning empowers large language models (LLMs) as agents to use external tools and extend their utility. Existing methods employ one single LLM-based agent to iteratively select and execute tools, thereafter incorporating execution…

Computation and Language · Computer Science 2024-06-25 Zhengliang Shi , Shen Gao , Xiuyi Chen , Yue Feng , Lingyong Yan , Haibo Shi , Dawei Yin , Pengjie Ren , Suzan Verberne , Zhaochun Ren

Repository-aware code translation is critical for modernizing legacy systems, enhancing maintainability, and enabling interoperability across diverse programming languages. While recent advances in large language models (LLMs) have improved…

Software Engineering · Computer Science 2025-08-26 Ziqi Guan , Xin Yin , Zhiyuan Peng , Chao Ni

Prevalent retrieval-based tool-use pipelines struggle with a dual semantic challenge: their retrievers often employ encoders that fail to capture complex semantics, while the Large Language Model (LLM) itself lacks intrinsic tool knowledge…

Artificial Intelligence · Computer Science 2026-01-30 Bowen Fang , Wen Ye , Yunyue Su , Jinghao Zhang , Qiang Liu , Yesheng Liu , Xin Sun , Shu Wu , Jiabing Yang , Baole Wei , Liang Wang

Large language model agents are increasingly expected to perform operational work: calling APIs, manipulating files, assembling workflows, and acting inside enterprise systems. Yet the tool layer on which this execution depends is still…

Software Engineering · Computer Science 2026-05-28 Swanand Rao

Real-world language agents must handle complex, multi-step workflows across diverse Apps. For instance, an agent may manage emails by coordinating with calendars and file systems, or monitor a production database to detect anomalies and…

The central challenge of AI for Science is not reasoning alone, but the ability to create computational methods in an open-ended scientific world. Existing LLM-based agents rely on static, pre-defined tool libraries, a paradigm that…

Artificial Intelligence · Computer Science 2026-01-13 Jiaxuan Lu , Ziyu Kong , Yemin Wang , Rong Fu , Haiyuan Wan , Cheng Yang , Wenjie Lou , Haoran Sun , Lilong Wang , Yankai Jiang , Xiaosong Wang , Xiao Sun , Dongzhan Zhou

Recent advancements in function calling and tool use have significantly enhanced the capabilities of large language models (LLMs) by enabling them to interact with external information sources and execute complex tasks. However, the limited…

Machine Learning · Computer Science 2024-09-05 Suhong Moon , Siddharth Jha , Lutfi Eren Erdogan , Sehoon Kim , Woosang Lim , Kurt Keutzer , Amir Gholami

Protocol standardization and sharing are crucial for reproducibility in life sciences. In spite of numerous efforts for standardized protocol description, adherence to these standards in literature remains largely inconsistent. Curation of…

Quantitative Methods · Quantitative Biology 2023-12-12 Shuo Jiang , Daniel Evans-Yamamoto , Dennis Bersenev , Sucheendra K. Palaniappan , Ayako Yachie-Kinoshita

Scientific workflow systems are increasingly popular for expressing and executing complex data analysis pipelines over large datasets, as they offer reproducibility, dependability, and scalability of analyses by automatic parallelization on…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-09 Mario Sänger , Ninon De Mecquenem , Katarzyna Ewa Lewińska , Vasilis Bountris , Fabian Lehmann , Ulf Leser , Thomas Kosch

Tool calling has become increasingly popular for Large Language Models (LLMs). However, for large tool sets, the resulting tokens would exceed the LLM's context window limit, making it impossible to include every tool. Hence, an external…

Computation and Language · Computer Science 2026-03-03 Saptarshi Sengupta , Zhengyu Zhou , Jun Araki , Xingbo Wang , Bingqing Wang , Suhang Wang , Zhe Feng