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Predicting molecular properties is a critical component of drug discovery. Recent advances in deep learning, particularly Graph Neural Networks (GNNs), have enabled end-to-end learning from molecular structures, reducing reliance on manual…

Computation and Language · Computer Science 2025-09-26 Peng Zhou , Lai Hou Tim , Zhixiang Cheng , Kun Xie , Chaoyi Li , Wei Liu , Xiangxiang Zeng

The limited extrapolative power of structure-based machine learning (ML) models is a critical bottleneck in chemical discovery, particularly for industrial R&D, where navigating uncharted chemical space to find next-generation materials or…

Metal-Organic Frameworks (MOFs) are materials with a high degree of porosity that can be used for applications in energy storage, water desalination, gas storage, and gas separation. However, the chemical space of MOFs is close to an…

Machine Learning · Computer Science 2022-10-26 Zhonglin Cao , Rishikesh Magar , Yuyang Wang , Amir Barati Farimani

We introduce a multi-tasking graph convolutional neural network, HydraGNN, to simultaneously predict both global and atomic physical properties and demonstrate with ferromagnetic materials. We train HydraGNN on an open-source ab initio…

Materials Science · Physics 2022-05-09 Massimiliano Lupo Pasini , Pei Zhang , Samuel Temple Reeve , Jong Youl Choi

Low-dimensional embeddings are a cornerstone in the modelling and analysis of complex networks. However, most existing approaches for mining network embedding spaces rely on computationally intensive machine learning systems to facilitate…

Social and Information Networks · Computer Science 2024-10-04 Alexandros Xenos , Noel-Malod Dognin , Natasa Przulj

In recent years, Deep Neural Networks (DNN) based methods have achieved remarkable performance in a wide range of tasks and have been among the most powerful and widely used techniques in computer vision. However, DNN-based methods are both…

Computer Vision and Pattern Recognition · Computer Science 2017-08-30 Peisong Wang , Jian Cheng

Accelerated materials discovery is an urgent demand to drive advancements in fields such as energy conversion, storage, and catalysis. Property-directed generative design has emerged as a transformative approach for rapidly discovering new…

DFT+U is a widely used treatment in the density functional theory (DFT) to deal with correlated materials that contain open-shell elements, whereby the quantitative and sometimes even qualitative failures of local and semilocal…

Computational Physics · Physics 2024-02-09 Zhendong Cao , Guanghui Cai , Fankai Xie , Huaxian Jia , Wei Liu , Yaxian Wang , Feng Liu , Xinguo Ren , Sheng Meng , Miao Liu

Materials discovery is crucial for making scientific advances in many domains. Collections of data from experiments and first-principle computations have spurred interest in applying machine learning methods to create predictive models…

Deep neural networks (DNNs) have recently been applied and used in many advanced and diverse tasks, such as medical diagnosis, automatic driving, etc. Due to the lack of transparency of the deep models, DNNs are often criticized for their…

Computer Vision and Pattern Recognition · Computer Science 2020-10-15 Qing Yang , Xia Zhu , Jong-Kae Fwu , Yun Ye , Ganmei You , Yuan Zhu

There are two fundamental problems in applying deep learning/machine learning methods to disease classification tasks, one is the insufficient number and poor quality of training samples; another one is how to effectively fuse multiple…

Machine Learning · Computer Science 2023-07-25 Menglin Kong , Shaojie Zhao , Juan Cheng , Xingquan Li , Ri Su , Muzhou Hou , Cong Cao

Recent breakthroughs in Deep Neural Networks (DNNs) have fueled a tremendously growing demand for bringing DNN-powered intelligence into mobile platforms. While the potential of deploying DNNs on resource-constrained platforms has been…

Machine Learning · Computer Science 2020-06-09 Sicong Liu , Junzhao Du , Kaiming Nan , ZimuZhou , Atlas Wang , Yingyan Lin

The particle-flow (PF) algorithm is used in general-purpose particle detectors to reconstruct a comprehensive particle-level view of the collision by combining information from different subdetectors. A graph neural network (GNN) model,…

Data Analysis, Statistics and Probability · Physics 2021-11-29 Farouk Mokhtar , Raghav Kansal , Daniel Diaz , Javier Duarte , Joosep Pata , Maurizio Pierini , Jean-Roch Vlimant

Deep Neural Networks (DNNs) have already become a crucial computational approach to revealing the spatial patterns in the human brain; however, there are three major shortcomings in utilizing DNNs to detect the spatial patterns in…

Machine Learning · Computer Science 2022-05-26 Wei Zhang , Yu Bao

The Hopfield model is a paradigmatic model of neural networks that has been analyzed for many decades in the statistical physics, neuroscience, and machine learning communities. Inspired by the manifold hypothesis in machine learning, we…

Disordered Systems and Neural Networks · Physics 2023-05-01 Matteo Negri , Clarissa Lauditi , Gabriele Perugini , Carlo Lucibello , Enrico Malatesta

Signal processing, communications, and control have traditionally relied on classical statistical modeling techniques. Such model-based methods utilize mathematical formulations that represent the underlying physics, prior information and…

Signal Processing · Electrical Eng. & Systems 2022-09-13 Nir Shlezinger , Jay Whang , Yonina C. Eldar , Alexandros G. Dimakis

In comparison to classical shallow representation learning techniques, deep neural networks have achieved superior performance in nearly every application benchmark. But despite their clear empirical advantages, it is still not well…

Machine Learning · Computer Science 2022-01-11 Calvin Murdock , George Cazenavette , Simon Lucey

A neural network is essentially a high-dimensional complex mapping model by adjusting network weights for feature fitting. However, the spectral bias in network training leads to unbearable training epochs for fitting the high-frequency…

Signal Processing · Electrical Eng. & Systems 2021-06-22 Zhi Zeng , Pengpeng Shi , Fulei Ma , Peihan Qi

Modern Hopfield Neural Networks (HNNs), also known as Dense Associative Memories (DAMs), enhance the performance of simple recurrent neural networks by leveraging the nonlinearities in their energy functions. They have broad applications in…

Optics · Physics 2026-01-12 Khalid Musa , Santosh Kumar , Michael Katidis , Yu-Ping Huang

Molecular dynamics is a powerful simulation tool to explore material properties. Most of the realistic material systems are too large to be simulated with first-principles molecular dynamics. Classical molecular dynamics has lower…

Computational Physics · Physics 2021-01-11 Zun Wang , Chong Wang , Sibo Zhao , Shiqiao Du , Yong Xu , Bing-Lin Gu , Wenhui Duan