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We build a model for the hepatic fatty acid metabolism and its metabolic and genetic regulations. The model has two functioning modes: synthesis and oxidation of fatty acids. We provide a sufficient condition (the strong lipolytic…

Cell Behavior · Quantitative Biology 2007-05-23 O. Radulescu , A. Siegel , E. Pecou , S. Lagarrigue

Many natural and technological systems fail to adapt to changing external conditions and move to a different state if the conditions vary too fast. Such "non-adiabatic" processes are ubiquitous, but little understood. We identify these…

Dynamical Systems · Mathematics 2015-06-18 Clare Perryman , Sebastian Wieczorek

Predicting cellular metabolic states is a central problem in biophysics. Conventional approaches, however, sensitively depend on the microscopic details of individual metabolic systems. In this Letter, we derived a universal linear…

Molecular Networks · Quantitative Biology 2023-07-26 Jumpei F. Yamagishi , Tetsuhiro S. Hatakeyama

The way we eat and what we eat, the way we move and the way we sleep significantly impact the risk of becoming obese. These aspects of behavior decompose into several personal behavioral elements including our food choices, eating place…

Computers and Society · Computer Science 2019-11-20 Christos Diou , Ioannis Sarafis , Vasileios Papapanagiotou , Ioannis Ioakimidis , Anastasios Delopoulos

We present a whole-body model of human metabolism that utilizes a system of organs and blood vessels to simulate the enzymatic reactions. The model focuses on key organs, including the brain, heart and lungs, liver, gut, and kidney, as well…

Quantitative Methods · Quantitative Biology 2023-08-01 Jacob Bendsen , Peter Emil Carstensen , Asbjørn Thode Reenberg , Tobias K. S. Ritschel , John Bagterp Jørgensen

The origin and shape of metabolic scaling has been controversial since Kleiber found that basal metabolic rate of animals seemed to vary as a power law of their body mass with exponent 3/4, instead of 2/3, as a surface-to-volume argument…

Understanding the quantitative patterns behind scientific disciplines is fundamental for informed research policy. While many fields have been studied from this perspective, Urban Science (USc) and its subfields remain underexplored. As…

Physics and Society · Physics 2025-01-17 Mariana Brüning-González , José Ignacio Arroyo , Pablo A. Marquet , Horacio Samaniego

Athletic training is characterized by physiological systems responding to repeated exercise-induced stress, resulting in gradual alterations in the functional properties of these systems. The adaptive response leading to improved…

Quantitative Methods · Quantitative Biology 2025-06-30 Hilkka Kontro , Armando Mastracci , Stephen S. Cheung , Martin J. MacInnis

The regulation of metabolic activity by tuning enzyme expression levels is crucial to sustain cellular growth in changing environments. Metabolic networks are often studied at steady state using constraint-based models and optimization…

Molecular Networks · Quantitative Biology 2014-10-24 Steffen Waldherr , Diego A. Oyarzún , Alexander Bockmayr

This study examines how patterns on mammal body surfaces change as they transition from juveniles to adults and with seasonal variations. Our previous research suggests that patterns formed in infancy may fade due to the growing domain…

Biological Physics · Physics 2024-06-25 Shin Nishihara , Toru Ohira

Metabolism and evolution are closely connected: if a mutation incurs extra energetic costs for an organism, there is a baseline selective disadvantage that may or may not be compensated for by other adaptive effects. A long-standing, but to…

Populations and Evolution · Quantitative Biology 2019-06-19 Efe Ilker , Michael Hinczewski

Metabolic pathways are fundamental maps in biochemistry that detail how molecules are transformed through various reactions. The complexity of metabolic network, where a single compound can play a part in multiple pathways, poses a…

Quantitative Methods · Quantitative Biology 2024-09-18 Li Tuobang

A plethora of computational models have been developed in recent decades to account for the morphogenesis of complex biological fluid networks, such as capillary beds. Contemporary adaptation models are based on optimization schemes where…

Tissues and Organs · Quantitative Biology 2021-11-16 Felix Kramer , Carl D. Modes

In the context of the global obesity epidemic, it is important to know who becomes obese and why. However, the processes that determine the changing shape of Body Mass Index (BMI) distributions in high-income societies are not…

Physics and Society · Physics 2018-02-07 John C. Lang , Hans De Sterck , Daniel M. Abrams

We propose a whole-body model of the metabolism in man as well as a generalized approach for modeling metabolic networks. Using this approach, we are able to write a large metabolic network in a systematic and compact way. We demonstrate…

Quantitative Methods · Quantitative Biology 2022-05-04 Peter Emil Carstensen , Jacob Bendsen , Asbjørn Thode Reenberg , Tobias K. S. Ritschel , John Bagterp Jørgensen

We consider finite-range, many-body fermionic lattice models and we study the evolution of their thermal equilibrium state after introducing a weak and slowly varying time-dependent perturbation. Under suitable assumptions on the external…

Mathematical Physics · Physics 2024-07-12 Rafael L. Greenblatt , Markus Lange , Giovanna Marcelli , Marcello Porta

Muscles consume metabolic energy (ATP) to produce force. A mathematical model for energy expenditure can be useful in estimating real-time costs of movements or to predict energy optimal movements. Metabolic cost models developed so far…

Tissues and Organs · Quantitative Biology 2025-01-03 Sriram Sekaripuram Muralidhar , Kristen Heitman , Samuel C. Walcott , Manoj Srinivasan

We propose a method for finding metabolic parameters of cells, organs and whole organisms, which is based on the earlier discovered general growth law. Based on the obtained results and analysis of available biological models, we propose a…

Tissues and Organs · Quantitative Biology 2015-09-14 Yuri K. Shestopaloff

We formulate a phenomenological effective field theory in which biological intelligence emerges as a macroscopic order parameter sustained by continuous metabolic flux. By modeling cognition as a coarse-grained neural activity field…

Statistical Mechanics · Physics 2026-02-24 Gunn Kim

From the past few years, due to advancements in technologies, the sedentary living style in urban areas is at its peak. This results in individuals getting a victim of obesity at an early age. There are various health impacts of obesity…

Machine Learning · Computer Science 2021-08-23 Satvik Garg , Pradyumn Pundir