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Related papers: Towards Neural Graph Data Management

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Machine learning on graphs has made substantial progress across domains such as molecular property prediction and chip design. Yet benchmarking practices remain fragmented, often relying on narrow, task-specific datasets and inconsistent…

Graph databases (GDBs) like Neo4j and TigerGraph excel at handling interconnected data but lack advanced inference capabilities. Neural Graph Databases (NGDBs) address this by integrating Graph Neural Networks (GNNs) for predictive analysis…

The increasing demand for deep learning-based foundation models has highlighted the importance of efficient data retrieval mechanisms. Neural graph databases (NGDBs) offer a compelling solution, leveraging neural spaces to store and query…

Machine Learning · Computer Science 2025-07-09 Qi Hu , Weifeng Jiang , Haoran Li , Zihao Wang , Jiaxin Bai , Qianren Mao , Yangqiu Song , Lixin Fan , Jianxin Li

Benefiting from high-quality datasets and standardized evaluation metrics, machine learning (ML) has achieved sustained progress and widespread applications. However, while applying machine learning to relational databases (RDBs), the…

Machine Learning · Computer Science 2023-10-31 Zizhao Zhang , Yi Yang , Lutong Zou , He Wen , Tao Feng , Jiaxuan You

Graph database engines play a pivotal role in efficiently storing and managing graph data across various domains, including bioinformatics, knowledge graphs, and recommender systems. Ensuring data accuracy within graph database engines is…

Databases · Computer Science 2024-02-02 Jiayi Wu , Zhengyu Wu , Ronghua Li , Hongchao Qin , Guoren Wang

Neural Graph Databases (NGDBs) facilitate complex logical reasoning over incomplete knowledge structures, yet their training efficiency and expressivity are constrained by rigid query-level batching and structure-exclusive embeddings. We…

Machine Learning · Computer Science 2026-02-26 Zhongwei Xie , Jiaxin Bai , Shujie Liu , Haoyu Huang , Yufei Li , Yisen Gao , Hong Ting Tsang , Yangqiu Song

Graph neural networks (GNNs) are powerful deep learning models for graph-structured data, demonstrating remarkable success across diverse domains. Recently, the database (DB) community has increasingly recognized the potentiality of GNNs,…

Databases · Computer Science 2025-02-20 Ziming Li , Youhuan Li , Yuyu Luo , Guoliang Li , Chuxu Zhang

Machine learning provides a valuable tool for analyzing high-dimensional functional neuroimaging data, and is proving effective in predicting various neurological conditions, psychiatric disorders, and cognitive patterns. In functional…

Machine Learning · Computer Science 2024-11-25 Anwar Said , Roza G. Bayrak , Tyler Derr , Mudassir Shabbir , Daniel Moyer , Catie Chang , Xenofon Koutsoukos

Graph data management is instrumental for several use cases such as recommendation, root cause analysis, financial fraud detection, and enterprise knowledge representation. Efficiently supporting these use cases yields a number of unique…

Deep graph models have achieved great success in network representation learning. However, their focus on pairwise relationships restricts their ability to learn pervasive higher-order interactions in real-world systems, which can be…

Machine Learning · Computer Science 2025-09-30 Fan Li , Xiaoyang Wang , Wenjie Zhang , Ying Zhang , Xuemin Lin

Graph Neural Networks (GNNs) are exemplary deep models designed for graph data. Message passing mechanism enables GNNs to effectively capture graph topology and push the performance boundaries across various graph tasks. However, the trend…

Neural and Evolutionary Computing · Computer Science 2025-09-29 Huizhe Zhang , Jintang Li , Yuchang Zhu , Liang Chen , Li Kuang

Large language models (LLMs) have become increasingly pivotal across various domains, especially in handling complex data types. This includes structured data processing, as exemplified by ChartQA and ChatGPT-Ada, and multimodal…

Graph classification benchmarks, vital for assessing and developing graph neural networks (GNNs), have recently been scrutinized, as simple methods like MLPs have demonstrated comparable performance. This leads to an important question: Do…

Machine Learning · Computer Science 2024-08-14 Zhengdao Li , Yong Cao , Kefan Shuai , Yiming Miao , Kai Hwang

Recent advances have demonstrated the effectiveness of graph-based learning on relational databases (RDBs) for predictive tasks. Such approaches require transforming RDBs into graphs, a process we refer to as RDB-to-graph modeling, where…

Machine Learning · Computer Science 2025-10-29 Dongwon Choi , Sunwoo Kim , Juyeon Kim , Kyungho Kim , Geon Lee , Shinhwan Kang , Myunghwan Kim , Kijung Shin

Graph databases (GDBs) enable processing and analysis of unstructured, complex, rich, and usually vast graph datasets. Despite the large significance of GDBs in both academia and industry, little effort has been made into integrating them…

Complex logical query answering (CLQA) is a recently emerged task of graph machine learning that goes beyond simple one-hop link prediction and solves a far more complex task of multi-hop logical reasoning over massive, potentially…

Databases · Computer Science 2023-03-28 Hongyu Ren , Mikhail Galkin , Michael Cochez , Zhaocheng Zhu , Jure Leskovec

Developments in Graph-Language Models (GLMs) aim to integrate the structural reasoning capabilities of Graph Neural Networks (GNNs) with the semantic understanding of Large Language Models (LLMs). However, we demonstrate that current…

Computation and Language · Computer Science 2025-08-29 Soham Petkar , Hari Aakash K , Anirudh Vempati , Akshit Sinha , Ponnurangam Kumarauguru , Chirag Agarwal

Graph Neural Networks (GNNs) have become the dominant framework for inductive graph-level learning. Yet most benchmarks focus on the regime $n \gg p$, where the number of graphs $n$ greatly exceeds the number of nodes per graph $p$. This…

Machine Learning · Computer Science 2026-05-18 Louisa Cornelis , Johan Mathe , Louis Van Langendonck , Guillermo Bernárdez , Nina Miolane

Graph foundation models (GFMs) have recently gained significant attention. However, the unique data processing and evaluation setups employed by different studies hinder a deeper understanding of their progress. Additionally, current…

Mapping the connectome of the human brain using structural or functional connectivity has become one of the most pervasive paradigms for neuroimaging analysis. Recently, Graph Neural Networks (GNNs) motivated from geometric deep learning…

Neurons and Cognition · Quantitative Biology 2022-11-30 Hejie Cui , Wei Dai , Yanqiao Zhu , Xuan Kan , Antonio Aodong Chen Gu , Joshua Lukemire , Liang Zhan , Lifang He , Ying Guo , Carl Yang
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