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The Optimized Gradient Method (OGM), its strongly convex extension, the Information Theoretical Exact Method (ITEM), as well as the related Triple Momentum Method (TMM) have superior convergence guarantees when compared to the Fast Gradient…
Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…
We consider the problem of computing the Maximal Exact Matches (MEMs) of a given pattern $P[1 .. m]$ on a large repetitive text collection $T[1 .. n]$, which is represented as a (hopefully much smaller) run-length context-free grammar of…
The NP-hard Metric Dimension problem is to decide for a given graph G and a positive integer k whether there is a vertex subset of size at most k that separates all vertex pairs in G. Herein, a vertex v separates a pair {u,w} if the…
Subset-Sum and k-SAT are two of the most extensively studied problems in computer science, and conjectures about their hardness are among the cornerstones of fine-grained complexity. One of the most intriguing open problems in this area is…
The classic exact pattern matching problem, given two strings -- a pattern $P$ of length $m$ and a text $T$ of length $n$ -- asks whether $P$ occurs as a substring of $T$. A property tester for the problem needs to distinguish (with high…
In the Densest $k$-Subgraph problem, given an undirected graph $G$ and an integer $k$, the goal is to find a subgraph of $G$ on $k$ vertices that contains maximum number of edges. Even though the state-of-the-art algorithm for the problem…
Given an LZW/LZ78 compressed text, we want to find an approximate occurrence of a given pattern of length m. The goal is to achieve time complexity depending on the size n of the compressed representation of the text instead of its length.…
Given a graph $G = (V, E)$, we wish to compute a spanning tree whose maximum vertex degree, i.e. tree degree, is as small as possible. Computing the exact optimal solution is known to be NP-hard, since it generalizes the Hamiltonian path…
A maximal matching can be maintained in fully dynamic (supporting both addition and deletion of edges) $n$-vertex graphs using a trivial deterministic algorithm with a worst-case update time of O(n). No deterministic algorithm that…
Given a set of points $P$ and axis-aligned rectangles $\mathcal{R}$ in the plane, a point $p \in P$ is called \emph{exposed} if it lies outside all rectangles in $\mathcal{R}$. In the \emph{max-exposure problem}, given an integer parameter…
Ordered matchings, defined as graphs with linearly ordered vertices, where each vertex is connected to exactly one edge, play a crucial role in the area of ordered graphs and their homomorphisms. Therefore, we consider related problems from…
Assume we are given a set of parallel line segments in the plane, and we wish to place a point on each line segment such that the resulting point set maximizes or minimizes the area of the largest or smallest triangle in the set. We analyze…
In $(k,r)$-Center we are given a (possibly edge-weighted) graph and are asked to select at most $k$ vertices (centers), so that all other vertices are at distance at most $r$ from a center. In this paper we provide a number of tight…
The maximum intersection problem for a matroid and a greedoid, given by polynomial-time oracles, is shown $NP$-hard by expressing the satisfiability of boolean formulas in 3-conjunctive normal form as such an intersection. The corresponding…
The Minimum Fill-in problem is to decide if a graph can be triangulated by adding at most k edges. Kaplan, Shamir, and Tarjan [FOCS 1994] have shown that the problem is solvable in time O(2^(O(k)) + k2 * nm) on graphs with n vertices and m…
The regular expression matching problem asks whether a given regular expression of length $m$ matches a given string of length $n$. As is well known, the problem can be solved in $O(nm)$ time using Thompson's algorithm. Moreover, recent…
A \emph{binary tanglegram} is a drawing of a pair of rooted binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example, in phylogenetics, it is essential…
In the EDGE CLIQUE COVER (ECC) problem, given a graph G and an integer k, we ask whether the edges of G can be covered with k complete subgraphs of G or, equivalently, whether G admits an intersection model on k-element universe. Gramm et…
Approximate Pattern Matching is among the most fundamental string-processing tasks. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to identify the fragments of $T$ that are at distance at most…