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AI models are increasingly deployed in live clinical environments where they must perform reliably across complex, high-stakes workflows that standard training and validation datasets were never designed to capture. Evaluating these systems…

Artificial Intelligence · Computer Science 2026-05-12 Prasanna Desikan , Harshit Rajgarhia , Shivali Dalmia , Ananya Mantravadi

As long-horizon coding agents produce more code than any developer can review, oversight collapses onto a single surface: the automated test suite. Reward hacking naturally arises in this setup, as the agent optimizes for passing tests…

Software Engineering · Computer Science 2026-05-21 Bingchen Zhao , Dhruv Srikanth , Yuxiang Wu , Zhengyao Jiang

AI-driven software development has rapidly advanced with the emergence of software development agents that leverage large language models (LLMs) to tackle complex, repository-level software engineering tasks. These agents go beyond just…

Software Engineering · Computer Science 2026-04-10 Zhi Chen , Wei Ma , Lingxiao Jiang

With the rapid advancement of large language models (LLMs), extensive research has been conducted to investigate the code generation capabilities of LLMs. However, existing efforts primarily focus on general-domain tasks, leaving LLMs' code…

Software Engineering · Computer Science 2025-03-18 Dewu Zheng , Yanlin Wang , Ensheng Shi , Xilin Liu , Yuchi Ma , Hongyu Zhang , Zibin Zheng

Code review is an effective software quality assurance activity; however, it is labor-intensive and time-consuming. Thus, a number of generation-based automatic code review (ACR) approaches have been proposed recently, which leverage deep…

Software Engineering · Computer Science 2023-03-14 Xin Zhou , Kisub Kim , Bowen Xu , DongGyun Han , Junda He , David Lo

AI agents -- systems that execute multi-step reasoning workflows with persistent state, tool access, and specialist skills -- represent a qualitative shift from prior automation technologies in social science. Unlike chatbots that respond…

Artificial Intelligence · Computer Science 2026-03-10 Yongjun Zhang

Nowadays, the fields of code and natural language processing are evolving rapidly. In particular, models become better at processing long context windows - supported context sizes have increased by orders of magnitude over the last few…

Modern coding scaffolds turn LLMs into capable software agents, but their ability to follow scaffold-specified instructions remains under-examined, especially when constraints are heterogeneous and persist across interactions. To fill this…

Repository-level code agents have shown strong promise in real-world feature addition tasks, making reliable evaluation of their capabilities increasingly important. However, existing benchmarks primarily evaluate these agents as black…

Software Engineering · Computer Science 2026-03-30 Shuhan Liu , Zhiyi Zhao , Xing Hu , Kui Liu , Xiaohu Yang , Xin Xia

Given a large and evolving codebase, the ability to automatically generate holistic, architecture-aware documentation that captures not only individual functions but also cross-file, cross-module, and system-level interactions remains an…

Software Engineering · Computer Science 2026-04-07 Anh Nguyen Hoang , Minh Le-Anh , Bach Le , Nghi D. Q. Bui

Modern software development demands code that is maintainable, testable, and scalable by organizing the implementation into modular components with iterative reuse of existing codes. We formalize this iterative, multi-turn paradigm as…

Software Engineering · Computer Science 2026-04-16 Sizhe Wang , Zhengren Wang , Dongsheng Ma , Yongan Yu , Rui Ling , Zhiyu Li , Feiyu Xiong , Wentao Zhang

Large language models (LLMs) have manifested strong ability to generate codes for productive activities. However, current benchmarks for code synthesis, such as HumanEval, MBPP, and DS-1000, are predominantly oriented towards introductory…

Computation and Language · Computer Science 2024-05-08 Shudan Zhang , Hanlin Zhao , Xiao Liu , Qinkai Zheng , Zehan Qi , Xiaotao Gu , Xiaohan Zhang , Yuxiao Dong , Jie Tang

Large language models (LLMs) are increasingly integrated in software development, but ensuring correctness in LLM-generated code remains challenging and often requires costly manual review. Verifiable code generation -- jointly generating…

Machine Learning · Computer Science 2026-03-18 Zhe Ye , Zhengxu Yan , Jingxuan He , Timothe Kasriel , Kaiyu Yang , Dawn Song

As single-cell RNA sequencing datasets grow in adoption, scale, and complexity, data analysis remains a bottleneck for many research groups. Although frontier AI agents have improved dramatically at software engineering and general data…

Genomics · Quantitative Biology 2026-02-11 Kenny Workman , Zhen Yang , Harihara Muralidharan , Aidan Abdulali , Hannah Le

As language models (LMs) become capable of handling a wide range of tasks, their evaluation is becoming as challenging as their development. Most generation benchmarks currently assess LMs using abstract evaluation criteria like helpfulness…

We present two comprehensive benchmarks to evaluate the performance of language models in coding assistance tasks, covering code writing, debugging, code review, and conceptual understanding. Our main contribution includes two curated…

Software Engineering · Computer Science 2024-12-10 Nidhish Shah , Zulkuf Genc , Dogu Araci

Implementing new features in repository-level codebases is a crucial application of code generation models. However, current benchmarks lack a dedicated evaluation framework for this capability. To fill this gap, we introduce FEA-Bench, a…

Software Engineering · Computer Science 2025-06-23 Wei Li , Xin Zhang , Zhongxin Guo , Shaoguang Mao , Wen Luo , Guangyue Peng , Yangyu Huang , Houfeng Wang , Scarlett Li

Formal verification is the next frontier for ensuring the correctness of code generated by Large Language Models (LLMs). While methods that co-generate code and formal specifications in formal languages, like Dafny, can, in principle, prove…

Programming Languages · Computer Science 2026-04-21 Lingfei Zeng , Fengdi Che , Xuhan Huang , Fei Ye , Xu Xu , Binhang Yuan , Jie Fu

A great part of software development involves conceptualizing or communicating the underlying procedures and logic that needs to be expressed in programs. One major difficulty of programming is turning concept into code, especially when…

Software Engineering · Computer Science 2021-09-23 Frank F. Xu , Bogdan Vasilescu , Graham Neubig

Large Language Models (LLMs) are increasingly applied to real-world code generation, where functional correctness alone is insufficient for reliable deployment, developers also expect adherence to explicit requirements for robustness,…

Software Engineering · Computer Science 2025-12-22 Sravani Gunnu , Shanmukha Guttula , Hima Patel