Related papers: An approach to non-equilibrium Markov chains throu…
The cycle space of a graph corresponds to the kernel of an incidence matrix. We investigate an analogous subspace for digraphs. In the case of digraphs of graphs, where every edge is replaced by two oppositely directed arcs, we give a…
We introduce the concept of pattern graphs--directed acyclic graphs representing how response patterns are associated. A pattern graph represents an identifying restriction that is nonparametrically identified/saturated and is often a…
A problem from thermodynamic formalism for countable symbolic Markov chains is considered. It concerns asymptotic behavior of the equilibrium measures corresponding to increasing sequences of finite sub-matrices of an infinite nonnegative…
Large continuous-time Markov chains with exponentially small transition rates arise in modeling complex systems in physics, chemistry and biology. We propose a constructive graph-algorithmic approach to determine the sequence of critical…
In the theory of line graphs of undirected graphs there exists an important theorem linking the incidence matrix of the root graph to the adjacency matrix of its line graph. For directed or mixed graphs, however, the exists no analogous…
In this paper, we develop an in-depth analysis of non-reversible Markov chains on denumerable state space from a similarity orbit perspective. In particular, we study the class of Markov chains whose transition kernel is in the similarity…
The vertex-edge incidence matrix of a (connected) unicyclic graph G is a square matrix which is invertible if and only if the cycle of G is an odd cycle. A combinatorial formula of the inverse of the incidence matrix of an odd unicyclic…
Markov chain Monte Carlo(MCMC) is a popular approach to sample from high dimensional distributions, and the asymptotic variance is a commonly used criterion to evaluate the performance. While most popular MCMC algorithms are reversible,…
We develop the theory of linear evolution equations associated with the adjacency matrix of a graph, focusing in particular on infinite graphs of two kinds: uniformly locally finite graphs as well as locally finite line graphs. We discuss…
We further clarify the relation between detailed-balanced and complex-balanced equilibria of reversible chemical reaction networks. Our results hold for arbitrary kinetics and also for boundary equilibria. Detailed balance, complex balance,…
In this paper, we demonstrate a useful interaction between the theory of clique partitions, edge clique covers of a graph, and the spectra of graphs. Using a clique partition and an edge clique cover of a graph we introduce the notion of a…
In this paper, we present criteria for non-exponential ergodicity of continuous-time Markov chains on a countable state space. These criteria can be verified by examining the ratio of transition rates over certain paths. We applied this…
In this research paper, weighted / unweighted, directed / undirected graphs are associated with interesting Discrete Time Markov Chains (DTMCs) as well as Continuous Time Markov Chains (CTMCs). The equilibrium / transient behaviour of such…
In this monography, it is proposed to consider the concepts of spectra of edge cuts and edge cycles of a graph as a basic mathematical structure for solving the problem of graph isomorphism. An edge cut is defined by an edge and the…
We extend previous work on injectivity in chemical reaction networks to general interaction networks. Matrix- and graph-theoretic conditions for injectivity of these systems are presented. A particular signed, directed, labelled, bipartite…
In this paper, we outline a model of graph (or network) dynamics based on two ingredients. The first ingredient is a Markov chain on the space of possible graphs. The second ingredient is a semi-Markov counting process of renewal type. The…
In this study, we explore the substructures of a hypergraph that lead us to linearly dependent rows (or columns) in the incidence matrix of the hypergraph. These substructures are closely related to the spectra of various hypergraph…
Following the lead of Stanley and Gessel, we consider a morphism which associates to an acyclic directed graph (or a poset) a quasi-symmetric function. The latter is naturally defined as multivariate generating series of non-decreasing…
This article describes a method for computing limits of a class of non-stationary Markov chains motivated by healthcare sojourn-time cycles. A mathematical validation of the computation method is also given. Applications are described that…
We investigate spectral properties of quantum graphs in the form of a periodic chain of rings with a connecting link between each adjacent pair, assuming that wave functions at the vertices are matched through conditions manifestly…