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Molecular property prediction, crucial for early drug candidate screening and optimization, has seen advancements with deep learning-based methods. While deep learning-based methods have advanced considerably, they often fall short in fully…

Biomolecules · Quantitative Biology 2024-07-01 Taojie Kuang , Yiming Ren , Zhixiang Ren

In topological data analysis, we want to discern topological and geometric structure of data, and to understand whether or not certain features of data are significant as opposed to simply random noise. While progress has been made on…

Computational Geometry · Computer Science 2020-01-10 So Mang Han , Taylor Okonek , Nikesh Yadav , Xiaojun Zheng

We develop a language for describing the relationship among observations, mathematical models, and the underlying principles from which they are derived. Using Information Geometry, we consider geometric properties of statistical models for…

Data Analysis, Statistics and Probability · Physics 2016-07-14 Mark K. Transtrum , Gus Hart , Peng Qiu

Accurate channel state information in wideband multiple-input multiple-output (MIMO) systems is fundamentally constrained by pilot overhead, a challenge that intensifies as antenna counts and bandwidths scale toward 6G. This paper proposes…

Signal Processing · Electrical Eng. & Systems 2026-03-03 Alexandre Barbosa de Lima

CLIP models have recently shown to exhibit Out of Distribution (OoD) generalization capabilities. However, Compositional Out of Distribution (C-OoD) generalization, which is a crucial aspect of a model's ability to understand unseen…

Computer Vision and Pattern Recognition · Computer Science 2024-07-17 Reza Abbasi , Mohammad Hossein Rohban , Mahdieh Soleymani Baghshah

Computer vision systems in real-world applications need to be robust to partial occlusion while also being explainable. In this work, we show that black-box deep convolutional neural networks (DCNNs) have only limited robustness to partial…

Computer Vision and Pattern Recognition · Computer Science 2020-06-30 Adam Kortylewski , Qing Liu , Angtian Wang , Yihong Sun , Alan Yuille

The local arrangement of atoms is one of the most important predictors of mechanical and functional properties of materials. However, algorithms for identifying the geometrical arrangements of atoms in complex materials systems are lacking.…

Materials Science · Physics 2019-04-15 Arash Dehghan Banadaki , Jason J. Maldonis , Paul M. Voyles , Srikanth Patala

A data-driven framework is presented, that enables the prediction of quantities, either observations or parameters, given sufficient partial data. The framework is illustrated via a computational model of the deposition of Cu in a Chemical…

Non-rigid 3D mesh matching is a critical step in computer vision and computer graphics pipelines. We tackle matching meshes that contain topological artefacts which can break the assumption made by current approaches. While Functional Maps…

Computer Vision and Pattern Recognition · Computer Science 2025-09-09 Aymen Merrouche , Stefanie Wuhrer , Edmond Boyer

While InfoNCE underlies modern contrastive learning, its geometric mechanisms remain under-characterized beyond the canonical alignment--uniformity decomposition. We develop a measure-theoretic framework in which representation measures…

Machine Learning · Computer Science 2026-05-26 Yichao Cai , Zhen Zhang , Yuhang Liu , Javen Qinfeng Shi

Spatial perception aims to estimate camera motion and scene structure from visual observations, a problem traditionally addressed through geometric modeling and physical consistency constraints. Recent learning-based methods have…

Computer Vision and Pattern Recognition · Computer Science 2026-02-17 Haichao Zhu , Zhaorui Yang , Qian Zhang

We study causal discovery from observational data in linear Gaussian systems affected by \emph{mixed latent confounding}, where some unobserved factors act broadly across many variables while others influence only small subsets. This…

Machine Learning · Computer Science 2026-01-01 Amir Asiaee , Samhita Pal , James O'quinn , James P. Long

Molecular structure has important applications in many fields. For example, some studies show that molecular spatial information can be used to achieve better prediction results when predicting molecular properties. However, traditional…

Chemical Physics · Physics 2022-03-14 Xiaohui Lin , Yongquan Jiang , Yan Yang

The revolution in materials in the past century was built on a knowledge of the atomic arrangements and the structure-property relationship. The sine qua non for obtaining quantitative structural information is single crystal…

Computational Physics · Physics 2023-12-27 Gabe Guo , Judah Goldfeder , Ling Lan , Aniv Ray , Albert Hanming Yang , Boyuan Chen , Simon JL Billinge , Hod Lipson

Three-way logical question answering (QA) assigns one of $\text{True}$, $\text{False}$, or $\text{Unknown}$ to a hypothesis $H$ given a premise set $S$. We study this task as a compact compositional inference problem: predictions for $H$…

Computation and Language · Computer Science 2026-05-28 Tianyi Huang , Ming Hou , Jiaheng Su , Yutong Zhang , Ziling Zhang

The framework of Partial Information Decomposition (PID) unveils complex nonlinear interactions in network systems by dissecting the mutual information (MI) between a target variable and several source variables. While PID measures have…

Data Analysis, Statistics and Probability · Physics 2024-09-23 Chiara Barà , Yuri Antonacci , Marta Iovino , Ivan Lazic , Luca Faes

It is difficult to quantify structure-property relationships and to identify structural features of complex materials. The characterization of amorphous materials is especially challenging because their lack of long-range order makes it…

Soft Condensed Matter · Physics 2019-09-11 Kirk Swanson , Shubhendu Trivedi , Joshua Lequieu , Kyle Swanson , Risi Kondor

Deploying machine learning models in safety-related do-mains (e.g. autonomous driving, medical diagnosis) demands for approaches that are explainable, robust against adversarial attacks and aware of the model uncertainty. Recent deep…

Computer Vision and Pattern Recognition · Computer Science 2020-12-14 Jan Kronenberger , Anselm Haselhoff

A major bottleneck in search-based program synthesis is the exponentially growing search space which makes learning large programs intractable. Humans mitigate this problem by leveraging the compositional nature of the real world: In…

Artificial Intelligence · Computer Science 2024-12-25 Jonas Witt , Sebastijan Dumančić , Tias Guns , Claus-Christian Carbon

Partial Information Decomposition (PID) has become one of the most prominent information-theoretic frameworks for describing the structure and quality of information in complex systems. Despite its widespread utility, there exists no unique…

Information Theory · Computer Science 2026-03-10 Alberto Liardi , Keenan J. A. Down , George Blackburne , Matteo Neri , Pedro A. M. Mediano