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In many applied settings, the chemical Langevin equation and linear noise approximation are used in the simulation and data analysis of stochastic reaction networks. With the goal of exploring the sensitivities of reaction network paths to…

Dynamical Systems · Mathematics 2024-12-24 Frederick Truman-Williams

Dynamical systems across the sciences, from electrical circuits to ecological networks, undergo qualitative and often catastrophic changes in behavior, called bifurcations, when their underlying parameters cross a threshold. Existing…

Machine Learning · Computer Science 2024-03-22 Noa Moriel , Matthew Ricci , Mor Nitzan

In non-linear dynamics there are several model systems to study oscillations. One iconic example is the "Brusselator", which describes the dynamics of the concentration of two chemical species in the non-equilibrium phase. In this work we…

Statistical Mechanics · Physics 2014-05-05 Nicolás Rubido

Complex systems exhibiting critical transitions when one of their governing parameters varies are ubiquitous in nature and in engineering applications. Despite a vast literature focusing on this topic, there are few studies dealing with the…

Fluid Dynamics · Physics 2018-03-08 Giacomo Bonciolini , Dominik Ebi , Edouard Boujo , Nicolas Noiray

Bifurcations mark qualitative changes of long-term behavior in dynamical systems and can often signal sudden ("hard") transitions or catastrophic events (divergences). Accurately locating them is critical not just for deeper understanding…

Machine Learning · Computer Science 2024-06-18 Yorgos M. Psarellis , Themistoklis P. Sapsis , Ioannis G. Kevrekidis

In this paper, we consider the nonlinear dynamical behaviors of some tabu leaning neuron models. We first consider a tabu learning single neuron model. By choosing the memory decay rate as a bifurcation parameter, we prove that Hopf…

Chaotic Dynamics · Physics 2015-06-26 Chunguang Li , Guanrong Chen , Xiaofeng Liao , Juebang Yu

Varying one of the governing parameters of a dynamical system may lead to a critical transition, where the new stable state is undesirable. In some cases, there is only a limited range of the bifurcation parameter that corresponds to that…

Fluid Dynamics · Physics 2018-11-27 Giacomo Bonciolini , Nicolas Noiray

Fluctuations in biochemical networks, e.g., in a living cell, have a complex origin that precludes a description of such systems in terms of bipartite or multipartite processes, as is usually done in the framework of stochastic and/or…

Statistical Mechanics · Physics 2020-01-29 R. Chétrite , M. L. Rosinberg , T. Sagawa , G. Tarjus

Virtually every organism gathers information about its noisy environment and builds models from that data, mostly using neural networks. Here, we use stochastic thermodynamics to analyse the learning of a classification rule by a neural…

Statistical Mechanics · Physics 2017-01-31 Sebastian Goldt , Udo Seifert

We introduce a numerical technique for controlling the location and stability properties of Hopf bifurcations in dynamical systems. The algorithm consists of solving an optimization problem constrained by an extended system of nonlinear…

Numerical Analysis · Mathematics 2023-09-20 Nicolas Boullé , Patrick E. Farrell , Marie E. Rognes

Bifurcation analysis has many applications in different scientific fields, such as electronics, biology, ecology, and economics. In population biology, deterministic methods of bifurcation are commonly used. In contrast, stochastic…

Dynamical Systems · Mathematics 2021-10-27 Almaz Tesfay , Daniel Tesfay , Shenglan Yuan , James Brannan , Jinqiao Duan

An optomechanical oscillator undergoes a Hopf bifurcation that connects two dynamical regimes with different information-processing capabilities: thermal Brownian motion and coherent self-sustained oscillation. Below threshold, the…

A dynamical system that undergoes a supercritical Hopf's bifurcation is perturbed by a multiplicative Brownian motion that scales with a small parameter $\epsilon$. The random fluctuations of the system at the critical point are studied…

Probability · Mathematics 2024-09-04 Michele Aleandri , Paolo Dai Pra

Biological and living systems process information across spatiotemporal scales, exhibiting the hallmark ability to constantly modulate their behavior to ever-changing and complex environments. In the presence of repeated stimuli, a…

Statistical Mechanics · Physics 2025-02-04 Giorgio Nicoletti , Matteo Bruzzone , Samir Suweis , Marco Dal Maschio , Daniel Maria Busiello

Biochemical reactions with oscillatory behavior play an essential role in synthetic biology at the microscopic scale. Although a robust stability theory for deterministic chemical oscillators in the macroscopic limit exists, the dynamical…

Molecular Networks · Quantitative Biology 2019-02-27 Pedro H. Constantino , Yiannis N. Kaznessis

We establish a method for the determination of the single-photon optomechanical coupling rate, which characterizes the radiation pressure interaction in an optomechanical system. The estimation of the rate with which a mechanical…

Quantum Physics · Physics 2021-03-08 Paolo Piergentili , Wenlin Li , Riccardo Natali , David Vitali , Giovanni Di Giuseppe

Tipping points characterize situations where a regulated system may experience a sudden and irreversible change and are generally associated with a random state of the system below which the change materializes. In this paper, we study a…

Optimization and Control · Mathematics 2026-02-25 Jean-Paul Décamps , Fabien Gensbittel , Thomas Mariotti , Stéphane Villeneuve

In this paper, we consider a continuous-time model with discrete and dis-tributed delays to describe how two pieces of information interact in online social networks. Sufficient conditions are carried out to illustrate the stability of each…

Dynamical Systems · Mathematics 2016-10-26 Jingli Ren , Fangzhi Yu

The Brusselator model are used for the study of the intrinsic fluctuations of chemical reactions with different approaches. The equilibrium states of systems are assumed to be spirally stable in mean-field description, and two statistical…

Chemical Physics · Physics 2019-02-22 Hong-Yuan Xu , Yu-Pin Luo , Ming-Chang Huang

A Hopf bifurcation is prevalent in many nonlinear dynamical systems. When a system prior to a Hopf bifurcation is exposed to a sufficient level of noise, its noise-induced dynamics can provide valuable information about the impending…

Fluid Dynamics · Physics 2021-01-19 Minwoo Lee
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