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Tool-use capability is a fundamental component of LLM agents, enabling them to interact with external systems through structured function calls. However, existing research exhibits inconsistent interaction representations, largely overlooks…

Artificial Intelligence · Computer Science 2026-05-26 Yijuan Liang , Xinghao Chen , Yifan Ge , Ziyi Wu , Hao Wu , Changyu Zeng , Wei Xing , Xiaoyu Shen

The integration of large language models (LLMs) with external tools has significantly expanded the capabilities of AI agents. However, as the diversity of both LLMs and tools increases, selecting the optimal model-tool combination becomes a…

Computation and Language · Computer Science 2026-01-08 Jinyang Wu , Guocheng Zhai , Ruihan Jin , Jiahao Yuan , Yuhao Shen , Shuai Zhang , Zhengqi Wen , Jianhua Tao

Automated single-cell annotation is difficult when the most abundant genes are not the most discriminative ones, or when a target state is poorly covered by a fixed reference atlas. GPTCelltype-style one-shot prompting allows large language…

Quantitative Methods · Quantitative Biology 2026-05-08 Yehui Yang , Zelin Zang , Xienan Zheng , Yuzhe Jia , Changxi Chi , Jingbo Zhou , Chang Yu , Jinlin Wu , Fuji Yang , Jiebo Luo , Zhen Lei , Stan Z. Li

Semi-supervised change detection (SSCD) aims to detect changes between bi-temporal remote sensing images by utilizing limited labeled data and abundant unlabeled data. Existing methods struggle in complex scenarios, exhibiting poor…

Computer Vision and Pattern Recognition · Computer Science 2025-09-30 Qi'ao Xu , Pengfei Wang , Yanjun Li , Tianwen Qian , Xiaoling Wang

Learning from multiple data streams in real-world scenarios is fundamentally challenging due to intrinsic heterogeneity and unpredictable concept drifts. Existing methods typically assume homogeneous streams and employ static architectures…

Machine Learning · Computer Science 2025-08-05 En Yu , Jie Lu , Kun Wang , Xiaoyu Yang , Guangquan Zhang

Transformative innovations in model architectures have introduced hierarchical embedding augmentation as a means to redefine the representation of tokens through multi-level semantic structures, offering enhanced adaptability to complex…

Computation and Language · Computer Science 2025-08-11 Derek Yotheringhay , Alistair Kirkland , Humphrey Kirkbride , Josiah Whitesteeple

Multi-agent deliberation systems using large language models (LLMs) are increasingly proposed for policy simulation, yet they suffer from artificial consensus: evaluator agents converge on the same option regardless of their assigned value…

Multiagent Systems · Computer Science 2026-04-30 Ariel Sela

Predicting drug efficacy and safety in vivo requires information on biological responses (e.g., cell morphology and gene expression) to small molecule perturbations. However, current molecular representation learning methods do not provide…

Machine Learning · Computer Science 2024-10-04 Gang Liu , Srijit Seal , John Arevalo , Zhenwen Liang , Anne E. Carpenter , Meng Jiang , Shantanu Singh

Token representations influence the efficiency and adaptability of language models, yet conventional tokenization strategies impose rigid segmentation boundaries that do not adjust dynamically to evolving contextual relationships. The…

Computation and Language · Computer Science 2025-08-11 Alistair Dombrowski , Beatrix Engelhardt , Dimitri Fairbrother , Henry Evidail

We present HippoCamp, a new benchmark designed to evaluate agents' capabilities on multimodal file management. Unlike existing agent benchmarks that focus on tasks like web interaction, tool use, or software automation in generic settings,…

Artificial Intelligence · Computer Science 2026-04-02 Zhe Yang , Shulin Tian , Kairui Hu , Shuai Liu , Hoang-Nhat Nguyen , Yichi Zhang , Zujin Guo , Mengying Yu , Zinan Zhang , Jingkang Yang , Chen Change Loy , Ziwei Liu

In this work, we introduce a novel problem setup termed as Heterogeneous Semi-Supervised Learning (HSSL), which presents unique challenges by bridging the semi-supervised learning (SSL) task and the unsupervised domain adaptation (UDA)…

Machine Learning · Computer Science 2025-03-04 Marzi Heidari , Abdullah Alchihabi , Hao Yan , Yuhong Guo

Concept Bottleneck Models (CBMs) have become a popular approach to enable interpretability in neural networks by constraining classifier inputs to a set of human-understandable concepts. While effective, current models embed concepts in…

Machine Learning · Computer Science 2026-05-13 Daniel Uyterlinde , Swasti Shreya Mishra , Pascal Mettes

In healthcare, multi-organ system diseases pose unique and significant challenges as they impact multiple physiological systems concurrently, demanding complex and coordinated treatment strategies. Despite recent advancements in the AI…

Artificial Intelligence · Computer Science 2025-08-08 Daniel J. Tan , Qianyi Xu , Kay Choong See , Dilruk Perera , Mengling Feng

Non-significant randomized control trials can hide subgroups of good responders to experimental drugs, thus hindering subsequent development. Identifying such heterogeneous treatment effects is key for precision medicine and many post-hoc…

Methodology · Statistics 2024-01-24 Valentine Perrin , Nathan Noiry , Nicolas Loiseau , Alex Nowak

Intracellular networks process cellular-level information and control cell fate. They can be computationally modeled using Boolean networks, which are implicit-time causal models of discrete binary events. These networks can be embedded in…

Molecular Networks · Quantitative Biology 2025-01-28 John Metzcar , Katie Pletz , Heber L. Rocha , Jordan C Rozum

Heterogeneity is a ubiquitous property of many biological systems and has profound implications for computation. While it is conceivable to optimize neuronal and synaptic heterogeneity for a specific task, such top-down optimization is…

Machine Learning · Computer Science 2025-12-02 Arash Golmohammadi , Jannik Luboeinski , Christian Tetzlaff

Large Language Models (LLMs) have revolutionized natural language interaction with data. The "holy grail" of data analytics is to build autonomous Data Agents that can self-drive complex data analysis workflows. However, current…

Databases · Computer Science 2026-04-01 Boyan Li , Yiran Peng , Yupeng Xie , Sirong Lu , Yizhang Zhu , Xing Mu , Xinyu Liu , Yuyu Luo

Handling incomplete and heterogeneous data remains a central challenge in real-world machine learning, where missing values may follow complex mechanisms (MCAR, MAR, MNAR) and features can be of mixed types (numerical and categorical).…

Machine Learning · Computer Science 2025-07-30 Youran Zhou , Mohamed Reda Bouadjenek , Jonathan Wells , Sunil Aryal

Predicting transcriptional responses to novel drugs provides a unique opportunity to accelerate biomedical research and advance drug discovery efforts. However, the inherent complexity and high dimensionality of cellular responses, combined…

Heterogeneous graph neural networks have become popular in various domains. However, their generalizability and interpretability are limited due to the discrepancy between their inherent inference flows and human reasoning logic or…

Machine Learning · Computer Science 2023-12-12 Tianqianjin Lin , Kaisong Song , Zhuoren Jiang , Yangyang Kang , Weikang Yuan , Xurui Li , Changlong Sun , Cui Huang , Xiaozhong Liu