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Graph autoencoders are efficient at embedding graph-based data sets. Most graph autoencoder architectures have shallow depths which limits their ability to capture meaningful relations between nodes separated by multi-hops. In this paper,…

Machine Learning · Computer Science 2022-08-08 Indrit Nallbani , Reyhan Kevser Keser , Aydin Ayanzadeh , Nurullah Çalık , Behçet Uğur Töreyin

Repetitive DNA (repeats) poses significant challenges for accurate and efficient genome assembly and sequence alignment. This is particularly true for metagenomic data, where genome dynamics such as horizontal gene transfer, gene…

Machine Learning · Computer Science 2024-02-15 Ali Azizpour , Advait Balaji , Todd J. Treangen , Santiago Segarra

Multivariate time series analysis is an important problem in data mining because of its widespread applications. With the increase of time series data available for training, implementing deep neural networks in the field of time series…

Machine Learning · Computer Science 2020-09-25 Chao Yang , Mingxing Jiang , Zhongwen Guo , Yuan Liu

Given the increasing volume and quality of genomics data, extracting new insights requires interpretable machine-learning models. This work presents Genomic Interpreter: a novel architecture for genomic assay prediction. This model…

Machine Learning · Computer Science 2023-06-29 Zehui Li , Akashaditya Das , William A V Beardall , Yiren Zhao , Guy-Bart Stan

Adaptable models could greatly benefit robotic agents operating in the real world, allowing them to deal with novel and varying conditions. While approaches such as Bayesian inference are well-studied frameworks for adapting models to…

Machine Learning · Computer Science 2023-10-20 Orr Krupnik , Elisei Shafer , Tom Jurgenson , Aviv Tamar

This paper explores convolutional generative networks as an alternative to iterative reconstruction algorithms in medical image reconstruction. The task of medical image reconstruction involves mapping of projection main data collected from…

Medical Physics · Physics 2020-12-04 V. S. S. Kandarpa , Alexandre Bousse , Didier Benoit , Dimitris Visvikis

Generative models are a class of AI models capable of creating new instances of data by learning and sampling from their statistical distributions. In recent years, these models have gained prominence in machine learning due to the…

Many machine learning methods have been recently developed to circumvent the high computational cost of the gradient-based topology optimization. These methods typically require extensive and costly datasets for training, have a difficult…

Machine Learning · Computer Science 2021-05-10 Mohammad Mahdi Behzadi , Horea T. Ilies

Symbolic regression (SR) is the process of discovering hidden relationships from data with mathematical expressions, which is considered an effective way to reach interpretable machine learning (ML). Genetic programming (GP) has been the…

Neural and Evolutionary Computing · Computer Science 2023-04-19 Peng Zeng , Xiaotian Song , Andrew Lensen , Yuwei Ou , Yanan Sun , Mengjie Zhang , Jiancheng Lv

Person re-identification (re-ID) via 3D skeleton data is an emerging topic with prominent advantages. Existing methods usually design skeleton descriptors with raw body joints or perform skeleton sequence representation learning. However,…

Computer Vision and Pattern Recognition · Computer Science 2023-08-01 Haocong Rao , Chunyan Miao

This paper introduces an enhanced Genetic Algorithm technique, which optimizes neural networks for binary image classification tasks, such as cat vs. non-cat classification. The proposed method employs only two individuals for crossover,…

Neural and Evolutionary Computing · Computer Science 2025-06-11 Tran Thuy Nga Truong , Jooyong Kim

During the continuous evolution of one organism's ancestry, its genes accumulate extensive experiences and knowledge, enabling newborn descendants to rapidly adapt to their specific environments. Motivated by this observation, we propose a…

Machine Learning · Computer Science 2023-06-30 Qiufeng Wang , Xu Yang , Shuxia Lin , Jing Wang , Xin Geng

This paper presents a novel graph-based deep learning model for tasks involving relations between two nodes (edge-centric tasks), where the focus lies on predicting relationships and interactions between pairs of nodes rather than node…

Machine Learning · Computer Science 2025-07-08 Eugenio Borzone , Leandro Di Persia , Matias Gerard

The inference of gene regulatory networks (GRNs) is a foundational stride towards deciphering the fundamentals of complex biological systems. Inferring a possible regulatory link between two genes can be formulated as a link prediction…

Machine Learning · Computer Science 2025-04-25 Binon Teji , Swarup Roy

Using evolutionary computation algorithms to solve multiple tasks with knowledge sharing is a promising approach. Image feature learning can be considered as a multitask problem because different tasks may have a similar feature space.…

Computer Vision and Pattern Recognition · Computer Science 2021-07-16 Ying Bi , Bing Xue , Mengjie Zhang

We introduceGraphGPT, a novel self-supervised generative pre-trained model for graph learning based on the Graph Eulerian Transformer (GET). First, we propose GET, which combines a standard transformer encoder or decoder architecture with…

Machine Learning · Computer Science 2025-06-09 Qifang Zhao , Weidong Ren , Tianyu Li , Hong Liu , Xingsheng He , Xiaoxiao Xu

Modern deep learning methods typically treat image sequences as large tensors of sequentially stacked frames. However, is this straightforward representation ideal given the current state-of-the-art (SoTA)? In this work, we address this…

Computer Vision and Pattern Recognition · Computer Science 2026-03-20 Snehal Singh Tomar , Alexandros Graikos , Arjun Krishna , Dimitris Samaras , Klaus Mueller

Face recognition performance based on deep learning heavily relies on large-scale training data, which is often difficult to acquire in practical applications. To address this challenge, this paper proposes a GAN-based data augmentation…

Computer Vision and Pattern Recognition · Computer Science 2026-02-03 Zhongwen Li , Zongwei Li , Xiaoqi Li

Surrogate models are used to reduce the burden of expensive-to-evaluate objective functions in optimization. By creating models which map genomes to objective values, these models can estimate the performance of unknown inputs, and so be…

Neural and Evolutionary Computing · Computer Science 2019-07-17 Alexander Hagg , Martin Zaefferer , Jörg Stork , Adam Gaier

The method of deep learning has achieved excellent results in improving the performance of robotic grasping detection. However, the deep learning methods used in general object detection are not suitable for robotic grasping detection.…

Computer Vision and Pattern Recognition · Computer Science 2021-01-26 Hu Cao , Guang Chen , Zhijun Li , Jianjie Lin , Alois Knoll