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As scientific work becomes more computational and data intensive, research processes and results become more difficult to interpret and reproduce. In this poster, we show how the Jupyter notebook, a tool originally designed as a free…

Digital Libraries · Computer Science 2018-04-17 Bernadette M. Boscoe , Irene V. Pasquetto , Milena S. Golshan , Christine L. Borgman

Computational notebooks are the primary coding tools for data scientists, but their code quality remains understudied and often poor. Given the importance of maintainability and reusability, enhancing code understandability is essential.…

Software Engineering · Computer Science 2025-06-19 Mojtaba Mostafavi Ghahfarokhi , Alireza Asadi , Arash Asgari , Bardia Mohammadi , Abbas Heydarnoori , Masih Beigi Rizi

Open Science, Reproducible Research, Findable, Accessible, Interoperable and Reusable (FAIR) data principles are long term goals for scientific dissemination. However, the implementation of these principles calls for a reinspection of our…

Digital Libraries · Computer Science 2021-03-11 Cristel Chandre , Jonathan Dubois

Jupyter notebooks are increasingly being adopted by teachers to deliver interactive practical sessions to their students. Notebooks come with many attractive features, such as the ability to combine textual explanations, multimedia content,…

Computers and Society · Computer Science 2023-09-29 Christophe Casseau , Jean-Rémy Falleri , Thomas Degueule , Xavier Blanc

The way in which data are shared can affect their utility and reusability. Here, we demonstrate how data that we had previously shared in bulk can be mobilized further through a knowledge graph that allows for much more granular exploration…

Computational Engineering, Finance, and Science · Computer Science 2025-01-07 Sheeba Samuel , Daniel Mietchen

Notebooks provide an interactive environment for programmers to develop code, analyse data and inject interleaved visualizations in a single environment. Despite their flexibility, a major pitfall that data scientists encounter is…

Databases · Computer Science 2021-10-27 Pavle Subotić , Lazar Milikić , Milan Stojić

Computational notebooks have emerged as the platform of choice for data science and analytical workflows, enabling rapid iteration and exploration. By keeping intermediate program state in memory and segmenting units of execution into…

Software Engineering · Computer Science 2021-06-22 Stephen Macke , Hongpu Gong , Doris Jung-Lin Lee , Andrew Head , Doris Xin , Aditya Parameswaran

AI-powered code assistants, such as Copilot, are quickly becoming a ubiquitous component of contemporary coding contexts. Among these environments, computational notebooks, such as Jupyter, are of particular interest as they provide rich…

Human-Computer Interaction · Computer Science 2023-01-27 Andrew M. McNutt , Chenglong Wang , Robert A. DeLine , Steven M. Drucker

Jupyter Notebook is the tool of choice of many data scientists in the early stages of ML workflows. The notebook format, however, has been criticized for inducing bad programming practices; indeed, researchers have already shown that…

Software Engineering · Computer Science 2022-05-25 Luigi Quaranta , Fabio Calefato , Filippo Lanubile

Semantic search, a process aimed at delivering highly relevant search results by comprehending the searcher's intent and the contextual meaning of terms within a searchable dataspace, plays a pivotal role in information retrieval. In this…

Information Retrieval · Computer Science 2024-02-21 Lan Li , Jinpeng Lv

Data science workflows are human-centered processes involving on-demand programming and analysis. While programmable and interactive interfaces such as widgets embedded within computational notebooks are suitable for these workflows, they…

Human-Computer Interaction · Computer Science 2023-03-27 Frederick Choi , Sajjadur Rahman , Hannah Kim , Dan Zhang

Computational notebooks -- such as Jupyter or Colab -- combine text and data analysis code. They have become ubiquitous in the world of data science and exploratory data analysis. Since these notebooks present a different programming…

Software Engineering · Computer Science 2022-07-20 Derek Robinson , Neil A. Ernst , Enrique Larios Vargas , Margaret-Anne D. Storey

Many annotation tools have been developed, covering a wide variety of tasks and providing features like user management, pre-processing, and automatic labeling. However, all of these tools use Graphical User Interfaces, and often require…

Computation and Language · Computer Science 2020-06-05 Jonathan K. Kummerfeld

Computational notebooks such as Jupyter are popular for exploratory data analysis and insight finding. Despite the module-based structure, notebooks visually appear as a single thread of interleaved cells containing text, code,…

Human-Computer Interaction · Computer Science 2023-08-22 Chen Chen , Jane Hoffswell , Shunan Guo , Ryan Rossi , Yeuk-Yin Chan , Fan Du , Eunyee Koh , Zhicheng Liu

In this paper, we outline potential ways for the further development of computational notebooks in Integrated Development Environments (IDEs). We discuss notebooks integration with IDEs, focusing on three main areas: facilitating…

Software Engineering · Computer Science 2024-02-22 Sergey Titov , Konstantin Grotov , Ashwin Prasad S. Venkatesh

In software engineering, numerous studies have focused on the analysis of fine-grained logs, leading to significant innovations in areas such as refactoring, security, and code completion. However, no similar studies have been conducted for…

Computational notebook software such as Jupyter Notebook is popular for data science tasks. Numerous computational notebooks are available on the Web and reusable; however, searching for computational notebooks manually is a tedious task,…

Information Retrieval · Computer Science 2022-02-01 Misato Horiuchi , Yuya Sasaki , Chuan Xiao , Makoto Onizuka

Computational reproducibility is fundamental to trustworthy science, yet remains difficult to achieve in practice across various research workflows, including Jupyter notebooks published alongside scholarly articles. Environment drift,…

Software Engineering · Computer Science 2026-04-02 Sheeba Samuel , Daniel Mietchen , Hemanta Lo , Martin Gaedke

Computational notebooks, such as Jupyter Notebook, have become data scientists' de facto programming environments. Many visualization researchers and practitioners have developed interactive visualization tools that support notebooks, yet…

Human-Computer Interaction · Computer Science 2024-04-01 Zijie J. Wang , David Munechika , Seongmin Lee , Duen Horng Chau

Using computational notebooks (e.g., Jupyter Notebook), data scientists rationalize their exploratory data analysis (EDA) based on their prior experience and external knowledge such as online examples. For novices or data scientists who…

Human-Computer Interaction · Computer Science 2021-12-16 Xingjun Li , Yizhi Zhang , Justin Leung , Chengnian Sun , Jian Zhao