Related papers: Simultaneous separation in bounded degree trees
In mathematical phylogenetics, labeled histories describe the sequences by which sets of labeled lineages coalesce to a shared ancestral lineage. We study labeled histories for at-most-$r$-furcating trees. Consider a rooted leaf-labeled…
We explore the concept of separating systems of vertex sets of graphs. A separating system of a set $X$ is a collection of subsets of $X$ such that for any pair of distinct elements in $X$, there exists a set in the separating system that…
A decision tree recursively splits a feature space $\mathbb{R}^{d}$ and then assigns class labels based on the resulting partition. Decision trees have been part of the basic machine-learning toolkit for decades. A large body of work treats…
In a graph G, a dissociation set is a subset of vertices which induces a subgraph with vertex degree at most 1. Finding a dissociation set of maximum cardinality in a graph is NP-hard even for bipartite graphs and is called the maximum…
Given a finite $n$-element set $X$, a family of subsets ${\mathcal F}\subset 2^X$ is said to separate $X$ if any two elements of $X$ are separated by at least one member of $\mathcal F$. It is shown that if $|\mathcal F|>2^{n-1}$, then one…
Minimum $k$-Section denotes the NP-hard problem to partition the vertex set of a graph into $k$ sets of sizes as equal as possible while minimizing the cut width, which is the number of edges between these sets. When $k$ is an input…
Extremal problems related to the enumeration of graph substructures, such as independent sets, matchings, and induced matchings, have become a prominent area of research with the advancement of graph theory. A subset of vertices is called a…
In a supercritical branching particle system, the trimmed tree consists of those particles which have descendants at all times. We develop this concept in the superprocess setting. For a class of continuous superprocesses with Feller…
We show that the edges of any planar graph of maximum degree at most $9$ can be partitioned into $4$ linear forests and a matching. Combined with known results, this implies that the edges of any planar graph $G$ of odd maximum degree…
Let $\Omega_n$ be the family of binary trees on $n$ vertices obtained by identifying the root of an rgood binary tree with a vertex of maximum eccentricity of a binary caterpillar. In the paper titled "On different middle parts of a tree…
The maximum number of vertices in a graph of maximum degree $\Delta\ge 3$ and fixed diameter $k\ge 2$ is upper bounded by $(1+o(1))(\Delta-1)^{k}$. If we restrict our graphs to certain classes, better upper bounds are known. For instance,…
Phylogenetic (i.e. leaf-labeled) trees play a fundamental role in evolutionary research. A typical problem is to reconstruct such trees from data like DNA alignments (whose columns are often referred to as characters), and a simple…
We describe a kernel of size 9k-8 for the NP-hard problem of computing the Tree Bisection and Reconnect (TBR) distance k between two unrooted binary phylogenetic trees. We achieve this by extending the existing portfolio of reduction rules…
We give a short and direct proof of a remarkable identity that arises in the enumeration of labeled trees with respect to their indegree sequence, where all edges are oriented from the vertex with lower label towards the vertex with higher…
We prove that every connected graph with $s$ vertices of degree not 2 has a spanning tree with at least ${1\over 4}(s-2)+2$ leaves. Let $G$ be a be a connected graph of girth $g$ with $v>1$ vertices. Let maximal chain of successively…
In this paper we enumerate and give bijections for the following four sets of vertices among rooted ordered trees of a fixed size: (i) first-children of degree $k$ at level $\ell$, (ii) non-first-children of degree $k$ at level $\ell-1$,…
We determine upper and lower bounds for the number of maximum matchings (i.e., matchings of maximum cardinality) $m(T)$ of a tree $T$ of given order. While the trees that attain the lower bound are easily characterised, the trees with…
We propose the conjecture that every graph $G$ of order $n$ with less than $3n-6$ edges has a vertex cut that induces a forest. Maximal planar graphs do not have such vertex cuts and show that the density condition would be best possible.…
The rooted subtree prune and regraft (rSPR) distance between two rooted binary phylogenetic trees is a well-studied measure of topological dissimilarity that is NP-hard to compute. Here we describe an improved linear kernel for the problem.…
Phylogenetic trees are leaf-labelled trees, where the leaves correspond to extant species (taxa), and the internal vertices represent ancestral species. The evolutionary history of a set of species can be explained by more than one…