Related papers: Coupling between Phase Separation and Geometry on …
We study the over-damped dynamics of individual one-dimensional elastic filaments subjected to a chiral active force which propels each point of the filament at a fixed angle relative to the tangent vector of the filament at that point.…
Elastic properties and internal states of isotropic sphere packings are studied by numerical simulations. Several numerical protocols to assemble dense configurations are compared. One, which imitates experiments with lubricated contacts,…
We review recent progress in understanding the full phase diagram of a one-dimensional, driven, two-species lattice model [Lahiri and Ramaswamy, PRL 79 (1997) 1150] in which the mobility of each species depends on the density of the other.…
In this work, phase diagrams of a modified two-mode phase-field crystal (PFC) that show two-dimensional (2D) and three-dimensional (3D) crystallographic structures were determined by utilizing a free energy minimization method. In this…
We study a strongly interacting crowded system of self-propelled stiff filaments by event-driven Brownian dynamics simulations and an analytical theory to elucidate the intricate interplay of crowding and self-propulsion. We find a…
We study the motion of a 1-D closed elastic string with bending and stretching energy immersed in a 2-D Stokes flow. In this paper we introduce the curve's tangent angle function and the stretching function to describe the deferent…
In order to study the detailed dynamics and associated non-perturbative features of QCD, a dual version of the color gauge theory based on the topologically viable homogeneous fiber bundle approach has been analysed taking into account its…
The effective free energy of globular protein chain is considered to be a functional defined on smooth curves in three dimensional Euclidean space. From the requirement of geometrical invariance, together with basic facts on conformation of…
This paper investigates the energy harvested from the flutter of a plate in an axial flow by making use of piezoelectric materials. The equations for fully-coupled linear dynamics of the fluid-solid and electrical systems are derived. The…
The dynamics of a particle coupled to a dense and homogeneous ideal Fermi gas in two spatial dimensions is studied. We analyze the model for coupling parameter g=1 (i.e., not in the weak coupling regime), and prove closeness of the time…
We study the excess free energy due to phase coexistence of fluids by Monte Carlo simulations using successive umbrella sampling in finite LxLxL boxes with periodic boundary conditions. Both the vapor-liquid phase coexistence of a simple…
A simple model of a circularly closed dsDNA in a poor solvent is considered as an example of a semi-flexible polymer with self-attraction. To find the ground states, the conformational energy is computed as a sum of the bending and…
We study the fluctuations of the two-time dependent global roughness of finite size elastic lines in a quenched random environment. We propose a scaling form for the roughness distribution function that accounts for the two-time,…
The concept of a protein diffusing in its free energy folding landscape has been fruitful for both theory and experiment. Yet the choice of the reaction coordinate (RC) introduces an undesirable degree of arbitrariness into the problem. We…
We present a model for cell growth, division and packing under soft constraints that arise from the deformability of the cells as well as of a membrane that encloses them. Our treatment falls within the framework of diffuse interface…
Receptor-mediated endocytosis requires that the energy of adhesion overcomes the deformation energy of the plasma membrane. The resulting driving force is balanced by dissipative forces, leading to deterministic dynamical equations. While…
We consider several one-dimensional driven lattice gas models that show a phase transition in the stationary state between a high-density fluid phase in which the particles are homogeneously distributed and a low-density jammed phase where…
The mechanical properties of crystals on curved substrates mix elastic, geometric and topological degrees of freedom. In order to elucidate the properties of such crystals we formulate the low-energy effective action that combines metric…
We derived free energy functional of a bilayer lipid membrane from the first principles of elasticity theory. The model explicitly includes position-dependent mutual slide of monolayers and bending deformation. Our free energy functional of…
Motivated by diverse phenomena in cellular biophysics, including bacterial flagellar motion and DNA transcription and replication, we study the overdamped nonlinear dynamics of a rotationally forced filament with twist and bend elasticity.…