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Neutral dynamics, where taxa are assumed to be demographically equivalent and their abundance is governed solely by the stochasticity of the underlying birth-death process, has proved itself as an important minimal model that accounts for…

Populations and Evolution · Quantitative Biology 2015-09-09 David Kessler , Samir Suweis , Marco Formentin , Nadav M. Shnerb

Inferring dynamical models from low-resolution temporal data continues to be a significant challenge in biophysics, especially within transcriptomics, where separating molecular programs from noise remains an important open problem. We…

Machine Learning · Computer Science 2023-10-05 Victor Chardès , Suryanarayana Maddu , Michael J. Shelley

A cross-diffusion system modeling the information herding of individuals is analyzed in a bounded domain with no-flux boundary conditions. The variables are the species' density and an influence function which modifies the information state…

Analysis of PDEs · Mathematics 2018-12-24 Ansgar Jüngel , Christian Kuehn , Lara Trussardi

We present an explicit unified stochastic model of fluctuations in population size due to random birth, death, density-dependent competition and environmental fluctuations. Stochastic dynamics provide insight into small populations,…

Populations and Evolution · Quantitative Biology 2008-07-31 Alexei J. Drummond , Peter D. Drummond

Noise induced changes in the critical and oscillatory behavior of a Prey-Predator system are studied using power spectrum density and Spectral Amplification Factor (SAF) analysis. In the absence of external noise, the population densities…

Statistical Mechanics · Physics 2009-10-31 A. F. Rozenfeld , C. J. Tessone , E. Albano , H. S. Wio

The problem of biological motion is a very intriguing and topical issue. Many efforts are being focused on the development of novel modeling approaches for the description of anomalous diffusion in biological systems, such as the very…

Noise and spatial degrees of freedom characterize most ecosystems. Some aspects of their influence on the coevolution of populations with cyclic interspecies competition have been demonstrated in recent experiments [e.g. B. Kerr et al.,…

Populations and Evolution · Quantitative Biology 2007-12-08 Tobias Reichenbach , Mauro Mobilia , Erwin Frey

We propose a statistical-stochastic surrogate modeling approach to predict the response of the mean and variance statistics under various initial conditions and external forcing perturbations. The proposed modeling framework extends the…

Data Analysis, Statistics and Probability · Physics 2023-04-07 Di Qi , John Harlim

Diffusion models proved to be powerful models for generative speech enhancement. In recent SGMSE+ approaches, training involves a stochastic differential equation for the diffusion process, adding both Gaussian and environmental noise to…

Audio and Speech Processing · Electrical Eng. & Systems 2024-06-14 Bunlong Lay , Timo Gerkmann

We develop a mathematical model of extinction and coexistence in a generic predator-prey ecosystem composed of two herbivores in asymmetrical competition and a hunter exerting a predatory pressure on both species. With the aim of…

Adaptation and Self-Organizing Systems · Physics 2017-08-28 Marcelo N Kuperman , Fabiana Laguna , Guillermo Abramson , Adrian Monjeau. Jose Luis Lanata

We prove the existence of traveling fronts in diffusive Rosenzweig-MacArthur and Holling-Tanner population models and investigate their relation with fronts in a scalar Fisher-KPP equation. More precisely, we prove the existence of fronts…

Analysis of PDEs · Mathematics 2019-05-29 Hong Cai , Anna Ghazaryan , Vahagn Manukian

We study the persistence and extinction of species in a simple food chain that is modelled by a Lotka-Volterra system with environmental stochasticity. There exist sharp results for deterministic Lotka-Volterra systems in the literature but…

Probability · Mathematics 2018-06-04 Alexandru Hening , Dang H. Nguyen

In this paper, we proposed a stochastic model which describes two species of particles moving in counterflow. The model generalizes the theoretical framework describing the transport in random systems since particles can work as mobile…

Soft Condensed Matter · Physics 2017-08-09 Eduardo Velasco Stock , Roberto da Silva , Henrique Almeida Fernandes

We study individual-based dynamics in finite populations, subject to randomly switching environmental conditions. These are inspired by models in which genes transition between on and off states, regulating underlying protein dynamics.…

Statistical Mechanics · Physics 2016-05-18 Peter G. Hufton , Yen Ting Lin , Tobias Galla , Alan J. McKane

Traditional epidemiological models often fail to characterize the extreme volatility and heavy-tailed "Dragon King" events observed in real-world outbreaks. We propose a unified framework that bridges microscopic agent-based simulations…

Populations and Evolution · Quantitative Biology 2026-02-10 Jose de Jesus Bernal-Alvarado , David Delepine

A model of the dynamics of natural rotifer populations is described as a discrete nonlinear map depending on three parameters, which reflect characteristics of the population and environment. Model dynamics and their change by variation of…

Subcellular Processes · Quantitative Biology 2007-05-23 Faina S. Berezovskaya , Georgy P. Karev , Terry W. Snell

A large deviation principle is established for a two-scale stochastic system in which the slow component is a continuous process given by a small noise finite dimensional It\^{o} stochastic differential equation, and the fast component is a…

Probability · Mathematics 2017-05-09 Amarjit Budhiraja , Paul Dupuis , Arnab Ganguly

We investigate a general class of models for swarming/self-collective behaviour in domains with boundaries. The model is expressed as a stochastic system of interacting particles subject to both reflecting boundary condition and common…

Probability · Mathematics 2025-10-21 Razvan C. Fetecau , Hui Huang , Jinniao Qiu

Two mathematical models of macroevolution are studied. These models have population dynamics at the species level, and mutations and extinction of species are also included. The population dynamics are updated by difference equations with…

Populations and Evolution · Quantitative Biology 2014-04-16 Yohsuke Murase , Takashi Shimada , Nobuyasu Ito , Per Arne Rikvold

How do competing populations convert a spatial advantage into macroscopic dominance? We introduce a stochastic model for resource competition that decouples the transient discovery phase from monopolization. Initial symmetry breaking is…

Populations and Evolution · Quantitative Biology 2026-03-12 Stuti Guha , Shawn D. Ryan , Bhargav R. Karamched