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Large Language Models are transforming software engineering, yet prompt management in practice remains ad hoc, hindering reliability, reuse, and integration into industrial workflows. We present Prompt-with-Me, a practical solution for…

Software Engineering · Computer Science 2025-09-23 Ziyou Li , Agnia Sergeyuk , Maliheh Izadi

Protocol standardization and sharing are crucial for reproducibility in life sciences. In spite of numerous efforts for standardized protocol description, adherence to these standards in literature remains largely inconsistent. Curation of…

Quantitative Methods · Quantitative Biology 2023-12-12 Shuo Jiang , Daniel Evans-Yamamoto , Dennis Bersenev , Sucheendra K. Palaniappan , Ayako Yachie-Kinoshita

Interfaces for machine learning (ML), information and visualizations about models or data, can help practitioners build robust and responsible ML systems. Despite their benefits, recent studies of ML teams and our interviews with…

Human-Computer Interaction · Computer Science 2022-02-21 Alex Bäuerle , Ángel Alexander Cabrera , Fred Hohman , Megan Maher , David Koski , Xavier Suau , Titus Barik , Dominik Moritz

Machine learning (ML) has the potential to revolutionize a wide range of research areas and industries, but many ML projects never progress past the proof-of-concept stage. To address this issue, we introduce Model Share AI (AIMS), an…

Software Engineering · Computer Science 2023-09-28 Heinrich Peters , Michael Parrott

Data-driven modeling based on Machine Learning (ML) is becoming a central component of protein engineering workflows. This perspective presents the elements necessary to develop effective, reliable, and reproducible ML models, and a set of…

Biomolecules · Quantitative Biology 2025-07-11 Fabio Herrera-Rocha , David Medina-Ortiz , Fabian Mauz , Juergen Pleiss , Mehdi D. Davari

Machine learning (ML) is believed to be an effective and efficient tool to build reliable prediction model or extract useful structure from an avalanche of data. However, ML is also criticized by its difficulty in interpretation and…

Human-Computer Interaction · Computer Science 2016-10-19 Teng Lee , James Johnson , Steve Cheng

Multiple Instance Learning (MIL) gains popularity in many real-life machine learning applications due to its weakly supervised nature. However, the corresponding effort on explaining MIL lags behind, and it is usually limited to presenting…

Machine Learning · Computer Science 2022-09-07 Dawid Rymarczyk , Adam Pardyl , Jarosław Kraus , Aneta Kaczyńska , Marek Skomorowski , Bartosz Zieliński

Efforts to make machine learning more widely accessible have led to a rapid increase in Auto-ML tools that aim to automate the process of training and deploying machine learning. To understand how Auto-ML tools are used in practice today,…

Human-Computer Interaction · Computer Science 2021-01-14 Doris Xin , Eva Yiwei Wu , Doris Jung-Lin Lee , Niloufar Salehi , Aditya Parameswaran

Model-Driven Engineering (MDE) has seen significant advancements with the integration of Machine Learning (ML) and Deep Learning (DL) techniques. Building upon the groundwork of previous investigations, our study provides a concise overview…

Software Engineering · Computer Science 2024-10-24 Juri Di Rocco , Davide Di Ruscio , Claudio Di Sipio , Phuong T. Nguyen , Riccardo Rubei

Machine learning (ML) research and application often involve time-consuming steps such as model architecture prototyping, feature selection, and dataset preparation. To support these tasks, we introduce the Deep Fast Machine Learning Utils…

Machine Learning · Computer Science 2024-09-17 Fabi Prezja

The practice of programming is undergoing a revolution with the introduction of AI assisted development (copilots) and the creation of new programming languages that are designed explicitly for tooling, analysis, and automation. Integrated…

Software Engineering · Computer Science 2024-06-17 Mark Marron

Integrated development environments (IDEs) are prevalent code-writing and debugging tools. However, they have yet to be widely adopted for launching machine learning (ML) experiments. This work aims to fill this gap by introducing JetTrain,…

Software Engineering · Computer Science 2024-02-19 Artem Trofimov , Mikhail Kostyukov , Sergei Ugdyzhekov , Natalia Ponomareva , Igor Naumov , Maksim Melekhovets

The integration of AI assistants into software development workflows is rapidly evolving, shifting from automation-assisted tasks to collaborative interactions between developers and AI. Large Language Models (LLMs) have demonstrated their…

Software Engineering · Computer Science 2025-06-16 Benedetta Donato , Leonardo Mariani , Daniela Micucci , Oliviero Riganelli , Marco Somaschini

Incorporating Machine Learning (ML) into existing systems is a demand that has grown among several organizations. However, the development of ML-enabled systems encompasses several social and technical challenges, which must be addressed by…

Software Engineering · Computer Science 2024-07-23 Gabriel Busquim , Allysson Allex Araújo , Maria Julia Lima , Marcos Kalinowski

The rise of machine learning (ML) and its integration into software systems has drastically changed development practices. While software engineering traditionally focused on manually created code artifacts with dedicated processes and…

Software Engineering · Computer Science 2025-02-25 Yorick Sens , Henriette Knopp , Sven Peldszus , Thorsten Berger

InterpretML is an open-source Python package which exposes machine learning interpretability algorithms to practitioners and researchers. InterpretML exposes two types of interpretability - glassbox models, which are machine learning models…

Machine Learning · Computer Science 2019-09-23 Harsha Nori , Samuel Jenkins , Paul Koch , Rich Caruana

As data science and machine learning methods are taking on an increasingly important role in the materials research community, there is a need for the development of machine learning software tools that are easy to use (even for nonexperts…

Computational Physics · Physics 2020-06-26 Ryan Jacobs , Tam Mayeshiba , Ben Afflerbach , Luke Miles , Max Williams , Matthew Turner , Raphael Finkel , Dane Morgan

Machine Learning (ML) is becoming more prevalent in the systems we use daily. Yet designers of these systems are under-equipped to design with these technologies. Recently, interactive visualizations have been used to present ML concepts to…

Human-Computer Interaction · Computer Science 2020-09-15 Chelsea M. Myers , Jiachi Xie , Jichen Zhu

Usability evaluation is an essential method to support the design of effective and intuitive user interfaces (UIs). However, it commonly relies on resource-intensive, expert-driven methods, which limit its accessibility, especially for…

Software Engineering · Computer Science 2026-04-13 Sebastian Lubos , Alexander Felfernig , Damian Garber , Gerhard Leitner , Julian Schwazer , Manuel Henrich

The traditional Machine Learning (ML) methodology requires to fragment the development and experimental process into disconnected iterations whose feedback is used to guide design or tuning choices. This methodology has multiple efficiency…

Machine Learning · Computer Science 2022-11-08 Andrea Gesmundo