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We consider a generalized version of the correlation clustering problem, defined as follows. Given a complete graph $G$ whose edges are labeled with $+$ or $-$, we wish to partition the graph into clusters while trying to avoid errors: $+$…

Data Structures and Algorithms · Computer Science 2016-05-25 Gregory J. Puleo , Olgica Milenkovic

Motivation: Clustering is a frequently used concept in variety of bioinformatical applications. We present a new method for hierarchical clustering of data called mutual information clustering (MIC) algorithm. It uses mutual information…

Quantitative Methods · Quantitative Biology 2007-05-23 Alexander Kraskov , Harald Stögbauer , Ralph G. Andrzejak , Peter Grassberger

One of the most widely used techniques for data clustering is agglomerative clustering. Such algorithms have been long used across many different fields ranging from computational biology to social sciences to computer vision in part…

Machine Learning · Computer Science 2014-07-15 Maria-Florina Balcan , Yingyu Liang , Pramod Gupta

Hierarchical Clustering (HC) is a widely studied problem in exploratory data analysis, usually tackled by simple agglomerative procedures like average-linkage, single-linkage or complete-linkage. In this paper we focus on two objectives,…

Data Structures and Algorithms · Computer Science 2018-08-08 Moses Charikar , Vaggos Chatziafratis , Rad Niazadeh

Hierarchical clustering is a powerful tool for exploratory data analysis, organizing data into a tree of clusterings from which a partition can be chosen. This paper generalizes these ideas by proving that, for any reasonable hierarchy, one…

Machine Learning · Computer Science 2025-11-13 Andrew Draganov , Pascal Weber , Rasmus Skibdahl Melanchton Jørgensen , Anna Beer , Claudia Plant , Ira Assent

In this paper we offer a new perspective on the well established agglomerative clustering algorithm, focusing on recovery of hierarchical structure. We recommend a simple variant of the standard algorithm, in which clusters are merged by…

Machine Learning · Statistics 2024-03-04 Annie Gray , Alexander Modell , Patrick Rubin-Delanchy , Nick Whiteley

Clustering is one of the most fundamental problems in data analysis and it has been studied extensively in the literature. Though many clustering algorithms have been proposed, clustering theories that justify the use of these clustering…

Machine Learning · Computer Science 2016-02-22 Cheng-Shang Chang , Wanjiun Liao , Yu-Sheng Chen , Li-Heng Liou

In this paper, we present a new approach of distributed clustering for spatial datasets, based on an innovative and efficient aggregation technique. This distributed approach consists of two phases: 1) local clustering phase, where each…

Databases · Computer Science 2018-02-05 Malika Bendechache , Nhien-An Le-Khac , M-Tahar Kechadi

Clustering is a technique for the analysis of datasets obtained by empirical studies in several disciplines with a major application for biomedical research. Essentially, clustering algorithms are executed by machines aiming at finding…

Quantitative Methods · Quantitative Biology 2024-09-30 Diego Ulisse Pizzagalli , Santiago Fernandez Gonzalez , Rolf Krause

This paper considers networks where relationships between nodes are represented by directed dissimilarities. The goal is to study methods for the determination of hierarchical clusters, i.e., a family of nested partitions indexed by a…

Machine Learning · Computer Science 2014-09-03 Gunnar Carlsson , Facundo Mémoli , Alejandro Ribeiro , Santiago Segarra

Clustering is an important part of many modern data analysis pipelines, including network analysis and data retrieval. There are many different clustering algorithms developed by various communities, and it is often not clear which…

Machine Learning · Computer Science 2019-10-04 Maria-Florina Balcan , Travis Dick , Manuel Lang

Clustering is a widely used technique in data mining applications for discovering patterns in underlying data. Most traditional clustering algorithms are limited to handling datasets that contain either numeric or categorical attributes.…

Artificial Intelligence · Computer Science 2007-05-23 Zengyou He , Xiaofei Xu , Shengchun Deng

We present a theory and an objective function for similarity-based hierarchical clustering of probabilistic partial orders and directed acyclic graphs (DAGs). Specifically, given elements $x \le y$ in the partial order, and their respective…

Machine Learning · Computer Science 2024-12-11 Daniel Bakkelund

Clustering is one of the major tasks in data mining. In the last few years, Clustering of spatial data has received a lot of research attention. Spatial databases are components of many advanced information systems like geographic…

Databases · Computer Science 2012-06-04 Mohamed A. El-Zawawy

Motivated by applications in community detection and dense subgraph discovery, we consider new clustering objectives in hypergraphs and bipartite graphs. These objectives are parameterized by one or more resolution parameters in order to…

Data Structures and Algorithms · Computer Science 2020-06-22 Nate Veldt , Anthony Wirth , David F. Gleich

A novel method to obtain hierarchical and overlapping clusters from network data -i.e., a set of nodes endowed with pairwise dissimilarities- is presented. The introduced method is hierarchical in the sense that it outputs a nested…

Social and Information Networks · Computer Science 2017-12-13 Fernando Gama , Santiago Segarra , Alejandro Ribeiro

A general scheme for divisive hierarchical clustering algorithms is proposed. It is made of three main steps : first a splitting procedure for the subdivision of clusters into two subclusters, second a local evaluation of the bipartitions…

Data Structures and Algorithms · Computer Science 2018-09-07 Maurice Roux

Partial orders and directed acyclic graphs are commonly recurring data structures that arise naturally in numerous domains and applications and are used to represent ordered relations between entities in the domains. Examples are task…

Machine Learning · Computer Science 2021-12-21 Daniel Bakkelund

Advances in sensing technologies and the growth of the internet have resulted in an explosion in the size of modern datasets, while storage and processing power continue to lag behind. This motivates the need for algorithms that are…

Machine Learning · Computer Science 2012-06-22 Akshay Krishnamurthy , Sivaraman Balakrishnan , Min Xu , Aarti Singh

Hierarchical clustering over graphs is a fundamental task in data mining and machine learning with applications in domains such as phylogenetics, social network analysis, and information retrieval. Specifically, we consider the recently…

Data Structures and Algorithms · Computer Science 2022-06-16 Arpit Agarwal , Sanjeev Khanna , Huan Li , Prathamesh Patil