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Two-dimensional patterns are used in many research areas in computer science, ranging from image processing to specification and verification of complex software systems (via scenarios). The contribution of this paper is twofold. First, we…

Programming Languages · Computer Science 2014-05-16 Iulia Teodora Banu-Demergian , Gheorghe Stefanescu

In the context of computer models, calibration is the process of estimating unknown simulator parameters from observational data. Calibration is variously referred to as model fitting, parameter estimation/inference, an inverse problem, and…

Methodology · Statistics 2023-10-16 Richard D. Wilkinson , Christopher W. Lanyon

In a recent paper, an algorithm has been presented for determining implications between a particular kind of category theoretic property represented by matrices -- the so called `matrix properties'. In this paper we extend this algorithm to…

Category Theory · Mathematics 2022-08-23 Michael Hoefnagel , Pierre-Alain Jacqmin

Inventory management, vehicle routing, and delivery scheduling decisions are simultaneously considered in the context of the inventory routing problem. This paper focuses on the continuous-time version of this problem where, unlike its more…

Optimization and Control · Mathematics 2024-10-25 Akang Wang , Xiandong Li , Jeffrey E. Arbogast , Zachary Wilson , Chrysanthos E. Gounaris

We develop an algorithmic theory of convex optimization over discrete sets. Using a combination of algebraic and geometric tools we are able to provide polynomial time algorithms for solving broad classes of convex combinatorial…

Optimization and Control · Mathematics 2009-01-24 Shmuel Onn

This work offers a broad perspective on probabilistic modeling and inference in light of recent advances in probabilistic programming, in which models are formally expressed in Turing-complete programming languages. We consider a typical…

Machine Learning · Statistics 2020-04-20 Lawrence M. Murray , Thomas B. Schön

Classification is an important goal in many branches of mathematics. The idea is to describe the members of some class of mathematical objects, up to isomorphism or other important equivalence in terms of relatively simple invariants. Where…

Logic · Mathematics 2008-03-25 Wesley Calvert , Julia F. Knight

This paper aims to develop a mathematical foundation to model knitting with graphs. We provide a precise definition for knit objects with a knot theoretic component and propose a simple undirected graph, a simple directed graph, and a…

Data Structures and Algorithms · Computer Science 2024-07-04 Kathryn Gray , Brian Bell , Diana Sieper , Stephen Kobourov , Falk Schreiber , Karsten Klein , Seokhee Hong

This paper proposes the use of causal modeling to detect and mitigate algorithmic bias. We provide a brief description of causal modeling and a general overview of our approach. We then use the Adult dataset, which is available for download…

Machine Learning · Computer Science 2023-11-10 Wendy Hui , Wai Kwong Lau

Harnessing the intrinsic dynamics of physical systems for information processing opens new avenues for computation embodied in matter. Using simulations of a model system, we show that assemblies of DNA tiles capable of self-organizing into…

Soft Condensed Matter · Physics 2025-10-23 Tim E. Veenstra , René van Roij , Marjolein Dijkstra

We study the problem of circular seriation, where we are given a matrix of pairwise dissimilarities between $n$ objects, and the goal is to find a {\em circular order} of the objects in a manner that is consistent with their dissimilarity.…

Data Structures and Algorithms · Computer Science 2021-06-11 Santiago Armstrong , Cristóbal Guzmán , Carlos A. Sing-Long

The successful development and optimisation of optically-driven micromachines will be greatly enhanced by the ability to computationally model the optical forces and torques applied to such devices. In principle, this can be done by…

We examine a variety of numerical methods that arise when considering dynamical systems in the context of physics-based simulations of deformable objects. Such problems arise in various applications, including animation, robotics, control…

Graphics · Computer Science 2021-08-19 Uri M. Ascher , Egor Larionov , Seung Heon Sheen , Dinesh K. Pai

We examine the optical properties of a system of nano and micro particles of varying size, shape, and material (including metals and dielectrics, and sub-wavelength and super-wavelength regimes). Training data is generated by numerically…

Mixed-integer linear programming (MILP) is widely employed for modeling combinatorial optimization problems. In practice, similar MILP instances with only coefficient variations are routinely solved, and machine learning (ML) algorithms are…

Optimization and Control · Mathematics 2023-03-07 Qingyu Han , Linxin Yang , Qian Chen , Xiang Zhou , Dong Zhang , Akang Wang , Ruoyu Sun , Xiaodong Luo

This paper describes a method for the recovering of software architectures from a set of similar (but unrelated) software products in binary form. One intention is to drive refactoring into software product lines and combine architecture…

Software Engineering · Computer Science 2016-08-08 Ian D. Peake , Jan Olaf Blech , Lasith Fernando , Divyasheel Sharma , Srini Ramaswamy , Mallikarjun Kande

We consider the problem of inference in higher-order undirected graphical models with binary labels. We formulate this problem as a binary polynomial optimization problem and propose several linear programming relaxations for it. We compare…

Optimization and Control · Mathematics 2024-12-17 Aida Khajavirad , Yakun Wang

Mathematical models are increasingly used in both academia and the pharmaceutical industry to understand how phenotypes emerge from systems of molecular interactions. However, their current construction as monolithic sets of equations…

Molecular Networks · Quantitative Biology 2007-10-19 Aneil Mallavarapu , Matthew Thomson , Benjamin Ullian , Jeremy Gunawardena

The ability to automatically discover interpretable mathematical models from data could forever change how we model soft matter systems. For convex discovery problems with a unique global minimum, model discovery is well-established. It…

Soft Condensed Matter · Physics 2024-04-11 Kevin Linka , Ellen Kuhl

Multi-material design optimization problems can, after discretization, be solved by the iterative solution of simpler sub-problems which approximate the original problem at an expansion point to first order. In particular, models…

Numerical Analysis · Mathematics 2026-04-01 Peter Gangl , Nico Nees , Michael Stingl