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Composition is a powerful principle for systems biology, focused on the interfaces, interconnections, and orchestration of distributed processes to enable integrative multiscale simulations. Whereas traditional models focus on the structure…

Other Quantitative Biology · Quantitative Biology 2024-11-25 Eran Agmon

To study discrete dynamical systems of different types --- deterministic, statistical and quantum --- we develop various approaches. We introduce the concept of a system of discrete relations on an abstract simplicial complex and develop…

Mathematical Physics · Physics 2010-11-10 Vladimir V. Kornyak

Mechanisms are a fundamental concept in many areas of science. Nonetheless, there has been little effort to develop structures to represent mechanisms. We explore the issues in developing a basic semantic modeling framework for describing…

Digital Libraries · Computer Science 2019-01-01 Robert B Allen

We propose a categorical framework for processes which interact bidirectionally with both an environment and a 'controller'. Examples include open learners, in which the controller is an optimiser such as gradient descent, and an approach…

Category Theory · Mathematics 2022-11-04 Matteo Capucci , Bruno Gavranović , Jules Hedges , Eigil Fjeldgren Rischel

We give a mathematical framework to describe the evolution of an open quantum systems subjected to finitely many interactions with classical apparatuses. The systems in question may be composed of distinct, spatially separated subsystems…

General Relativity and Quantum Cosmology · Physics 2007-05-23 R. Blute , I. T. Ivanov , P. Panangaden

Discussed is a model of collective and internal degrees of freedom with kinematics based on affine group and its subgroups. The main novelty in comparison with the previous attempts of this kind is that it is not only kinematics but also…

Composition is an important feature of a specification language, as it enables the design of a complex system in terms of a product of its parts. Decomposition is equally important in order to reason about structural properties of a system.…

Logic in Computer Science · Computer Science 2022-07-05 Benjamin Lion , Farhad Arbab , Carolyn Talcott

Fong developed `decorated cospans' to model various kinds of open systems: that is, systems with inputs and outputs. In this framework, open systems are seen as the morphisms of a category and can be composed as such, allowing larger open…

Category Theory · Mathematics 2020-08-07 Kenny Courser

A general theoretical framework for decoherence is proposed, which encompasses formalisms originally devised to deal just with open or with closed systems. The conditions for decoherence are clearly stated and the relaxation and decoherence…

Quantum Physics · Physics 2009-10-30 Mario Castagnino , Sebastian Fortin , Roberto Laura , Olimpia Lombardi

A concept of "evolving categories" is suggested to build a simple, scalable, mathematically consistent framework for representing in uniform way both data and algorithms. A state machine for executing algorithms becomes clear, rich and…

Data Structures and Algorithms · Computer Science 2007-05-23 Evgeny Yanenko

This article presents a general description of dynamical systems using the language of enriched functors and enriched natural transformations. This framework is essential to establish the equivalence of three descriptions of dynamics -- a…

Category Theory · Mathematics 2025-09-09 Suddhasattwa Das , Tomoharu Suda

We present a new metaphysical framework for physics that is conceptually clear, ontologically parsimonious, and empirically adequate. This framework relies on the notion of self-subsisting structure, that is, a set of fundamental physical…

History and Philosophy of Physics · Physics 2022-09-07 Antonio Vassallo , Pedro Naranjo , Tim Koslowski

The incoherent dynamical properties of open quantum systems are generically attributed to an ongoing correlation between the system and its environment. Here, we propose a novel way to assess the nature of these system-environment…

Quantum Physics · Physics 2018-01-23 Hong-Bin Chen , Clemens Gneiting , Ping-Yuan Lo , Yueh-Nan Chen , Franco Nori

Engineering safe and secure cyber-physical systems requires system engineers to develop and maintain a number of model views, both dynamic and static, which can be seen as algebras. We posit that verifying the composition of requirement,…

Systems and Control · Electrical Eng. & Systems 2021-12-28 Georgios Bakirtzis , Eswaran Subrahmanian , Cody H. Fleming

We introduce a notion of complexity of diagrams (and in particular of objects and morphisms) in an arbitrary category, as well as a notion of complexity of functors between categories equipped with complexity functions. We discuss several…

Category Theory · Mathematics 2020-07-01 Saugata Basu , M. Umut Isik

We provide an overview of a canonical formalism that describes mixed quantum-classical systems in terms of statistical ensembles on configuration space, and discuss applications to measurement theory. It is shown that the formalism allows a…

Quantum Physics · Physics 2009-07-06 M Reginatto , M J W Hall

We give an approach to open quantum systems based on formal deformation quantization. It is shown that classical open systems of a certain type can be systematically quantized into quantum open systems preserving the complete positivity of…

Mathematical Physics · Physics 2015-05-13 Florian Becher , Nikolai Neumaier , Stefan Waldmann

A class of models intended to be as minimal and structureless as possible is introduced. Even in cases with simple rules, rich and complex behavior is found to emerge, and striking correspondences to some important core known features of…

Discrete Mathematics · Computer Science 2020-10-07 Stephen Wolfram

Due to the increased complexity of software development projects more and more systems are described by models. The sheer size makes it impractical to describe these systems by a single model. Instead many models are developed that provide…

Software Engineering · Computer Science 2014-09-24 Christoph Herrmann , Holger Krahn , Bernhard Rumpe , Martin Schindler , Steven Völkel

We introduce a notion of compatibility between constraint encoding and compositional structure. Phrased in the language of category theory, it is given by a "composable constraint encoding". We show that every composable constraint encoding…

Category Theory · Mathematics 2021-12-14 Matt Wilson , Augustin Vanrietvelde