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Our objective in this study is to investigate the behavior of Boolean operators on combining annotation output from multiple Natural Language Processing (NLP) systems across multiple corpora and to assess how filtering by aggregation of…

Electronic health record (EHR) systems present clinicians with vast repositories of clinical information, creating a significant cognitive burden where critical details are easily overlooked. While Large Language Models (LLMs) offer…

Computation and Language · Computer Science 2026-03-17 Samuel Thio , Matthew Lewis , Spiros Denaxas , Richard JB Dobson

The multivariate, asynchronous nature of real-world clinical data, such as that generated in Intensive Care Units (ICUs), challenges traditional AI-based decision-support systems. These often assume data regularity and feature independence…

Machine Learning · Computer Science 2025-02-28 Ricardo Santos , André V. Carreiro , Xi Peng , Hugo Gamboa , Holger Fröhlich

Clinical language processing has received a lot of attention in recent years, resulting in new models or methods for disease phenotyping, mortality prediction, and other tasks. Unfortunately, many of these approaches are tested under…

Computation and Language · Computer Science 2022-09-30 Travis R. Goodwin , Dina Demner-Fushman

Objective: This study aims to consider small graphs of concepts and exploit them for expressing graph searches over existing COVID-19-related literature, leveraging the increasing use of graphs to represent and query scientific knowledge…

Information Retrieval · Computer Science 2024-06-25 Francesco Invernici , Anna Bernasconi , Stefano Ceri

Visual Question Answering (VQA) focuses on providing answers to natural language questions by utilizing information from images. Although cutting-edge multimodal large language models (MLLMs) such as GPT-4o achieve strong performance on VQA…

Computer Vision and Pattern Recognition · Computer Science 2025-07-09 Zhengxuan Zhang , Yin Wu , Yuyu Luo , Nan Tang

Introduction: Timely care in a specialised neuro-intensive therapy unit (ITU) reduces mortality and hospital stays, with planned admissions being safer than unplanned ones. However, post-operative care decisions remain subjective. This…

Discharge summaries require extracting critical information from lengthy electronic health records (EHRs), a process that is labor-intensive when performed manually. Large language models (LLMs) can improve generation efficiency; however,…

Computation and Language · Computer Science 2026-05-06 Severin Ye , Xiao Kong , Xiaopeng He , Guangsu Yan , Dongsuk Oh

Large Language Models (LLMs) are being adopted at an unprecedented rate, yet still face challenges in knowledge-intensive domains like biomedicine. Solutions such as pre-training and domain-specific fine-tuning add substantial computational…

Large language models (LLMs) have demonstrated significant potential in clinical decision support. Yet LLMs still suffer from hallucinations and lack fine-grained contextual medical knowledge, limiting their high-stake healthcare…

Computation and Language · Computer Science 2025-04-22 Pengcheng Jiang , Cao Xiao , Minhao Jiang , Parminder Bhatia , Taha Kass-Hout , Jimeng Sun , Jiawei Han

Clinical notes containing valuable patient information are written by different health care providers with various scientific levels and writing styles. It might be helpful for clinicians and researchers to understand what information is…

Computation and Language · Computer Science 2023-03-17 Hoda Memarzadeh , Nasser Ghadiri , Matthias Samwald , Maryam Lotfi Shahreza

Knowledge-intensive language tasks (KILTs) benefit from retrieving high-quality relevant contexts from large external knowledge corpora. Learning task-specific retrievers that return relevant contexts at an appropriate level of semantic…

Information Retrieval · Computer Science 2023-05-01 Jiangui Chen , Ruqing Zhang , Jiafeng Guo , Maarten de Rijke , Yiqun Liu , Yixing Fan , Xueqi Cheng

Common factors and microcounseling skills are critical to the effectiveness of psychotherapy. Understanding and measuring these elements provides valuable insights into therapeutic processes and outcomes. However, automatic identification…

Computation and Language · Computer Science 2025-07-01 Fabian Schmidt , Karin Hammerfald , Henrik Haaland Jahren , Vladimir Vlassov

Graph-based Retrieval Augmented Generation (GraphRAG) extends retrieval-augmented generation to support structured reasoning over complex corpora, but its reliability under resource-constrained, privacy-sensitive deployments remains…

Computation and Language · Computer Science 2026-05-21 Peter Fernandes , Ria Kanjilal

Large language models (LLMs) have demonstrated remarkable capabilities in a wide range of tasks, yet their application to specialized domains remains challenging due to the need for deep expertise. Retrieval-Augmented generation (RAG) has…

Computation and Language · Computer Science 2025-09-30 Qinggang Zhang , Shengyuan Chen , Yuanchen Bei , Zheng Yuan , Huachi Zhou , Zijin Hong , Hao Chen , Yilin Xiao , Chuang Zhou , Junnan Dong , Yi Chang , Xiao Huang

Advances in natural language processing techniques, such as named entity recognition and normalization to widely used standardized terminologies like UMLS or SNOMED-CT, along with the digitalization of electronic health records, have…

Computation and Language · Computer Science 2024-04-10 Fernando Gallego , Guillermo López-García , Luis Gasco-Sánchez , Martin Krallinger , Francisco J. Veredas

Entity recognition is a critical first step to a number of clinical NLP applications, such as entity linking and relation extraction. We present the first attempt to apply state-of-the-art entity recognition approaches on a newly released…

Computation and Language · Computer Science 2019-10-04 Kathleen C. Fraser , Isar Nejadgholi , Berry De Bruijn , Muqun Li , Astha LaPlante , Khaldoun Zine El Abidine

Large language models have shown remarkable language processing and reasoning ability but are prone to hallucinate when asked about private data. Retrieval-augmented generation (RAG) retrieves relevant data that fit into an LLM's context…

Machine Learning · Computer Science 2025-11-13 Alfred Clemedtson , Borun Shi

Research in CDCR remains fragmented due to heterogeneous dataset formats, varying annotation standards, and the predominance of the CDCR definition as the event coreference resolution (ECR). To address these challenges, we introduce uCDCR,…

Computation and Language · Computer Science 2026-03-04 Anastasia Zhukova , Terry Ruas , Jan Philip Wahle , Bela Gipp

Knowledge Graphs (KGs) are crucial in the field of artificial intelligence and are widely used in downstream tasks, such as question-answering (QA). The construction of KGs typically requires significant effort from domain experts. Large…

Computation and Language · Computer Science 2025-02-04 Rui Yang , Boming Yang , Aosong Feng , Sixun Ouyang , Moritz Blum , Tianwei She , Yuang Jiang , Freddy Lecue , Jinghui Lu , Irene Li