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Suffix trees are one of the most versatile data structures in stringology, with many applications in bioinformatics. Their main drawback is their size, which can be tens of times larger than the input sequence. Much effort has been put into…

Data Structures and Algorithms · Computer Science 2017-12-18 Andrea Farruggia , Travis Gagie , Gonzalo Navarro , Simon J. Puglisi , Jouni Sirén

IR models using a pretrained language model significantly outperform lexical approaches like BM25. In particular, SPLADE, which encodes texts to sparse vectors, is an effective model for practical use because it shows robustness to…

Computation and Language · Computer Science 2022-11-11 Hiroki Iida , Naoaki Okazaki

We propose novel compression algorithms for time-varying channel state information (CSI) in wireless communications. The proposed scheme combines (lossy) vector quantisation and (lossless) compression. First, the new vector quantisation…

Information Theory · Computer Science 2022-10-04 Henrique K. Miyamoto , Sheng Yang

This work proposes a simple instance retrieval pipeline based on encoding the convolutional features of CNN using the bag of words aggregation scheme (BoW). Assigning each local array of activations in a convolutional layer to a visual word…

Computer Vision and Pattern Recognition · Computer Science 2016-06-21 Eva Mohedano , Amaia Salvador , Kevin McGuinness , Ferran Marques , Noel E. O'Connor , Xavier Giro-i-Nieto

By incorporating additional contextual information, deep biasing methods have emerged as a promising solution for speech recognition of personalized words. However, for real-world voice assistants, always biasing on such personalized words…

Sound · Computer Science 2023-08-16 Tianyi Xu , Zhanheng Yang , Kaixun Huang , Pengcheng Guo , Ao Zhang , Biao Li , Changru Chen , Chao Li , Lei Xie

Recent techniques such as retrieval-augmented generation or chain-of-thought reasoning have led to longer contexts and increased inference costs. Context compression techniques can reduce these costs, but the most effective approaches…

Computation and Language · Computer Science 2025-10-24 Hippolyte Pilchen , Edouard Grave , Patrick Pérez

Remote sensing (RS) images are usually stored in compressed format to reduce the storage size of the archives. Thus, existing content-based image retrieval (CBIR) systems in RS require decoding images before applying CBIR (which is…

Computer Vision and Pattern Recognition · Computer Science 2023-01-24 Gencer Sumbul , Jun Xiang , Nimisha Thekke Madam , Begüm Demir

Large language models (LLMs) are increasingly used for semantic query processing over large corpora. A set of semantic operators derived from relational algebra has been proposed to provide a unified interface for expressing such queries,…

Databases · Computer Science 2026-03-06 Nan Hou , Kangfei Zhao , Jiadong Xie , Jeffrey Xu Yu

Given a text, rank and select queries return the number of occurrences of a character up to a position (rank) or the position of a character with a given rank (select). These queries have applications in, e.g., compression, computational…

Data Structures and Algorithms · Computer Science 2023-11-10 Matteo Ceregini , Florian Kurpicz , Rossano Venturini

The k-spectrum of a string is the set of all distinct substrings of length k occurring in the string. K-spectra have many applications in bioinformatics including pseudoalignment and genome assembly. The Spectral Burrows-Wheeler Transform…

Data Structures and Algorithms · Computer Science 2023-06-09 Jarno N. Alanko , Elena Biagi , Simon J. Puglisi

Transformers achieve remarkable performance in various domains, including NLP, CV, audio processing, and graph analysis. However, they do not scale well on long sequence tasks due to their quadratic complexity w.r.t. the inputs length.…

Machine Learning · Computer Science 2022-02-24 Maksim Zubkov , Daniil Gavrilov

Despite their widespread use, large language models (LLMs) are known to hallucinate incorrect information and be poorly calibrated. This makes the uncertainty quantification of these models of critical importance, especially in high-stakes…

Machine Learning · Computer Science 2025-06-27 Colin Samplawski , Adam D. Cobb , Manoj Acharya , Ramneet Kaur , Susmit Jha

Continual learning in large language models (LLMs) is prone to catastrophic forgetting, where adapting to new tasks significantly degrades performance on previously learned ones. Existing methods typically rely on low-rank,…

Frame selection is crucial due to high frame redundancy and limited context windows when applying Large Vision-Language Models (LVLMs) to long videos. Current methods typically select frames with high relevance to a given query, resulting…

Computer Vision and Pattern Recognition · Computer Science 2026-03-18 Wang Chen , Yuhui Zeng , Yongdong Luo , Tianyu Xie , Luojun Lin , Jiayi Ji , Yan Zhang , Xiawu Zheng

Prior work inspired by compression algorithms has described how the Burrows Wheeler Transform can be used to create a distance measure for bioinformatics problems. We describe issues with this approach that were not widely known, and…

Cryptography and Security · Computer Science 2020-02-19 Edward Raff , Charles Nicholas , Mark McLean

Vector representations and vector space modeling (VSM) play a central role in modern machine learning. We propose a novel approach to `vector similarity searching' over dense semantic representations of words and documents that can be…

Information Retrieval · Computer Science 2017-06-06 Jan Rygl , Jan Pomikálek , Radim Řehůřek , Michal Růžička , Vít Novotný , Petr Sojka

Component-based synthesis (CBS) aims to generate loop-free programs from a set of libraries whose methods are annotated with specifications and whose output must satisfy a set of logical constraints, expressed as a query. The effectiveness…

Programming Languages · Computer Science 2025-08-21 Ashish Mishra , Suresh Jagannathan

We explore the potential of continuous local search (CLS) in SAT solving by proposing a novel approach for finding a solution of a hybrid system of Boolean constraints. The algorithm is based on CLS combined with belief propagation on…

Artificial Intelligence · Computer Science 2021-06-15 Anastasios Kyrillidis , Moshe Y. Vardi , Zhiwei Zhang

We investigate the problem of recovering a structured sparse signal from a linear observation model with an uncertain dynamic grid in the sensing matrix. The state-of-the-art expectation maximization based compressed sensing (EM-CS)…

Signal Processing · Electrical Eng. & Systems 2024-07-25 An Liu , Yufan Zhou , Wenkang Xu

Transformer models are computationally costly on long sequences since regular attention has quadratic $O(n^2)$ time complexity. We introduce Wavelet-Enhanced Random Spectral Attention (WERSA), a novel mechanism of linear $O(n)$ time…

Machine Learning · Computer Science 2025-07-14 Vincenzo Dentamaro
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