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Graph Neural Networks (GNNs) are popular models for machine learning on graphs that typically follow the message-passing paradigm, whereby the feature of a node is updated recursively upon aggregating information over its neighbors. While…

Machine Learning · Computer Science 2024-05-07 Federico Barbero , Ameya Velingker , Amin Saberi , Michael Bronstein , Francesco Di Giovanni

Many prediction problems can be phrased as inferences over local neighborhoods of graphs. The graph represents the interaction between entities, and the neighborhood of each entity contains information that allows the inferences or…

Machine Learning · Computer Science 2016-11-22 Rakshit Agrawal , Luca de Alfaro , Vassilis Polychronopoulos

Gene regulatory networks play a crucial role in controlling an organism's biological processes, which is why there is significant interest in developing computational methods that are able to extract their structure from high-throughput…

Machine Learning · Statistics 2018-09-19 Ioan Gabriel Bucur , Tom van Bussel , Tom Claassen , Tom Heskes

While heterophily has been widely studied in node-level tasks, its impact on graph-level tasks remains unclear. We present the first analysis of heterophily in graph-level learning, combining theoretical insights with empirical validation.…

Machine Learning · Computer Science 2025-09-24 Qinhan Hou , Yilun Zheng , Xichun Zhang , Sitao Luan , Jing Tang

Graph Neural Networks (GNNs) have demonstrated remarkable success in various applications, yet they often struggle to capture long-range dependencies (LRD) effectively. This paper introduces GraphMinNet, a novel GNN architecture that…

Machine Learning · Computer Science 2025-02-04 Md Atik Ahamed , Andrew Cheng , Qiang Ye , Qiang Cheng

We present a probabilistic framework for overlapping community discovery and link prediction for relational data, given as a graph. The proposed framework has: (1) a deep architecture which enables us to infer multiple layers of latent…

Machine Learning · Statistics 2017-06-19 Changwei Hu , Piyush Rai , Lawrence Carin

Despite the remarkable progress facilitated by learning-based stereo-matching algorithms, disparity estimation in low-texture, occluded, and bordered regions still remains a bottleneck that limits the performance. To tackle these…

Computer Vision and Pattern Recognition · Computer Science 2024-02-29 Zihua Liu , Songyan Zhang , Zhicheng Wang , Masatoshi Okutomi

In the past, the dichotomy between homophily and heterophily has inspired research contributions toward a better understanding of Deep Graph Networks' inductive bias. In particular, it was believed that homophily strongly correlates with…

Machine Learning · Computer Science 2023-08-21 Daniele Castellana , Federico Errica

In applications of graphical models, we typically have more information than just the samples themselves. A prime example is the estimation of brain connectivity networks based on fMRI data, where in addition to the samples themselves, the…

Machine Learning · Statistics 2017-04-21 Yunqi Bu , Johannes Lederer

There has been a recent interest in understanding the power of local algorithms for optimization and inference problems on sparse graphs. Gamarnik and Sudan (2014) showed that local algorithms are weaker than global algorithms for finding…

Machine Learning · Statistics 2015-08-11 Elchanan Mossel , Jiaming Xu

Gene regulatory networks play a crucial role in controlling an organism's biological processes, which is why there is significant interest in developing computational methods that are able to extract their structure from high-throughput…

Machine Learning · Statistics 2019-09-11 Ioan Gabriel Bucur , Tom Claassen , Tom Heskes

We present a new method for learning Soft Random Geometric Graphs (SRGGs), drawn in probabilistic metric spaces, with the connection function of the graph defined as the marginal posterior probability of an edge random variable, given the…

Methodology · Statistics 2020-02-05 Kangrui Wang , Dalia Chakrabarty

We introduce and test a general machine-learning-based technique for the inference of short term causal dependence between state variables of an unknown dynamical system from time series measurements of its state variables. Our technique…

Adaptation and Self-Organizing Systems · Physics 2020-12-18 Amitava Banerjee , Jaideep Pathak , Rajarshi Roy , Juan G. Restrepo , Edward Ott

Retrieving the most similar objects in a large-scale database for a given query is a fundamental building block in many application domains, ranging from web searches, visual, cross media, and document retrievals. State-of-the-art…

Machine Learning · Computer Science 2018-03-15 Muge Li , Liangyue Li , Feiping Nie

Similarity search in high-dimensional spaces is an important task for many multimedia applications. Due to the notorious curse of dimensionality, approximate nearest neighbor techniques are preferred over exact searching techniques since…

Databases · Computer Science 2020-10-16 Omid Jafari , Parth Nagarkar , Jonathan Montaño

This article introduces a predictor-dependent joint modeling framework for network data obtained from multiple subjects over a shared set of nodes with spatial co-ordinates and spatially correlated nodal attributes. The framework is highly…

Randomized smoothing (RS) has successfully been used to improve the robustness of predictions for deep neural networks (DNNs) by adding random noise to create multiple variations of an input, followed by deciding the consensus. To…

Machine Learning · Computer Science 2024-04-29 Emmanouil Seferis , Stefanos Kollias , Chih-Hong Cheng

Accurate multistep forecasting of node-level attributes on dynamic graphs is critical for applications ranging from financial trust networks to biological networks. Existing spatiotemporal graph neural networks typically assume a static…

Machine Learning · Computer Science 2026-05-20 Namrata Banerji , Tanya Berger-Wolf

In robotic networks relying on noisy range measurements between agents for cooperative localization, the achievable positioning accuracy strongly strongly depends on the network geometry. This motivates the problem of planning robot…

Robotics · Computer Science 2025-02-25 Justin Cano , Jerome Le Ny

Brain areas' functional repertoires are shaped by their incoming and outgoing structural connections. In empirically measured networks, most connections are short, reflecting spatial and energetic constraints. Nonetheless, a small number of…

Neurons and Cognition · Quantitative Biology 2022-06-08 Richard F. Betzel , Danielle S. Bassett