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This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…

Information Theory · Computer Science 2022-05-10 Yonatan Yehezkeally , Daniella Bar-Lev , Sagi Marcovich , Eitan Yaakobi

In coding theory, handling errors that occur when symbols are inserted or deleted from a transmitted message is a long-standing challenge. Optimising redundancy for insertion and deletion channels remains a key open problem with significant…

Information Theory · Computer Science 2026-02-02 Anamika Singh , Abhay Kumar Singh

It is conjectured that quantum computers are able to solve certain problems more quickly than any deterministic or probabilistic computer. A quantum computer exploits the rules of quantum mechanics to speed up computations. However, it is a…

Information Theory · Computer Science 2009-08-15 Salah A. Aly

We propose coding techniques that limit the length of homopolymers runs, ensure the GC-content constraint, and are capable of correcting a single edit error in strands of nucleotides in DNA-based data storage systems. In particular, for…

Information Theory · Computer Science 2020-01-10 Tuan Thanh Nguyen , Kui Cai , Kees A. Schouhamer Immink , Han Mao Kiah

We give improved lower bounds for binary $3$-query locally correctable codes (3-LCCs) $C \colon \{0,1\}^k \rightarrow \{0,1\}^n$. Specifically, we prove: (1) If $C$ is a linear design 3-LCC, then $n \geq 2^{(1 - o(1))\sqrt{k} }$. A design…

Computational Complexity · Computer Science 2024-10-29 Pravesh K. Kothari , Peter Manohar

In this paper, we consider quantum error correction over depolarizing channels with non-binary low-density parity-check codes defined over Galois field of size $2^p$ . The proposed quantum error correcting codes are based on the binary…

Information Theory · Computer Science 2016-11-15 Kenta Kasai , Manabu Hagiwara , Hideki Imai , Kohichi Sakaniwa

In this paper, we present a new framework how a PDE with constraints can be formulated into a sequence of PDEs with no constraints, whose solutions are convergent to the solution of the PDE with constraints. This framework is then used to…

Numerical Analysis · Mathematics 2024-05-28 Jiwei Jia , Young Ju Lee , Ruitong Shan

Motivated by applications to DNA-storage, flash memory, and magnetic recording, we study perfect burst-correcting codes for the limited-magnitude error channel. These codes are lattices that tile the integer grid with the appropriate error…

Information Theory · Computer Science 2022-01-06 Hengjia Wei , Moshe Schwartz

We demonstrate propagation rules of subsystem code constructions by extending, shortening and combining given subsystem codes. Given an $[[n,k,r,d]]_q$ subsystem code, we drive new subsystem codes with parameters $[[n+1,k,r,\geq d]]_q$,…

Quantum Physics · Physics 2008-11-11 Salah A. Aly

We study segmented burst-deletion channels motivated by the observation that synchronization errors commonly occur in a bursty manner in real-world settings. In this channel model, transmitted sequences are implicitly divided into…

Information Theory · Computer Science 2025-07-21 Yajuan Liu , Tolga M. Duman

To well understand the behavior of quantum error correction codes (QECC) in noise processes, we need to obtain explicit coding maps for QECC. Due to extraordinary amount of computational labor that they entails, explicit coding maps are a…

Quantum Physics · Physics 2022-03-04 Chaobin Liu

The Damerau-Levenshtein distance between two sequences is the minimum number of operations (deletions, insertions, substitutions, and adjacent transpositions) required to convert one sequence into another. Notwithstanding a long history of…

Information Theory · Computer Science 2025-07-08 Zuo Ye , Gennian Ge

Quantum error correction (QEC) is crucial for realizing scalable quantum technologies, and topological quantum error correction (TQEC) has emerged as the most experimentally advanced paradigm of QEC. Existing homological and topological…

Quantum Physics · Physics 2026-01-21 Xiang Zou , Hoi-Kwong Lo

Entanglement-assisted quantum error correcting codes (EAQECCs) play a significant role in protecting quantum information from decoherence and quantum noise. Recently, constructing entanglement-assisted quantum maximum distance separable…

Information Theory · Computer Science 2020-09-17 Wan Jiang , Shixin Zhu , Xiaojing Chen

Explicit non-asymptotic upper bounds on the sizes of multiple-deletion correcting codes are presented. In particular, the largest single-deletion correcting code for $q$-ary alphabet and string length $n$ is shown to be of size at most…

Information Theory · Computer Science 2012-11-15 Ankur A. Kulkarni , Negar Kiyavash

We construct a general family of quantum codes that protect against all emission, absorption, dephasing, and raising/lowering errors up to an arbitrary fixed order. Such codes are known in the literature as absorption-emission (AE) codes.…

Quantum Physics · Physics 2025-06-06 Arda Aydin , Alexander Barg

Quantum error correction is rapidly seeing first experimental implementations, but there is a significant gap between asymptotically optimal error-correcting codes and codes that are experimentally feasible. Quantum LDPC codes range from…

The construction of quantum error-correcting codes (QECCs) with good parameters is a hot topic in the area of quantum information and quantum computing. Quantum maximum distance separable (QMDS) codes are optimal because the minimum…

Quantum Physics · Physics 2024-06-18 Shanqi Pang , Mengqian Chen , Rong Yan , Yan Zhu

Quantum error correction (QEC) is essential for scalable quantum computing. However, it requires classical decoders that are fast and accurate enough to keep pace with quantum hardware. While quantum low-density parity-check codes have…

Quantum Physics · Physics 2026-04-10 Andi Gu , J. Pablo Bonilla Ataides , Mikhail D. Lukin , Susanne F. Yelin

Background Nucleotide sequences contain multiple codes responsible for organism's functioning and structure. They can be investigated by various signal processing methods. These techniques are well suited for indication of frequently…

Quantitative Methods · Quantitative Biology 2007-05-23 Simon Kogan