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The geometric vertex decomposability property for polynomial ideals is an ideal-theoretic generalization of the vertex decomposability property for simplicial complexes. Indeed, a homogeneous geometrically vertex decomposable ideal is…

Let $I_A \subset K[x_1,\ldots,x_n]$ be a toric ideal. In this paper, we provide a necessary and sufficient condition for the toric variety $V(I_A)$, over an algebraically closed field, to be expressed as the set-theoretic intersection of…

Let X* be a subset of an affine space A^s, over a finite field K, which is parameterized by the edges of a clutter. Let X and Y be the images of X* under the maps x --> [x] and x --> [(x,1)] respectively, where [x] and [(x,1)] are points in…

For a finite index sublattice $L$ of the root lattice $A_{n}$, we construct a deterministic algorithm to deform the lattice ideal $I_L$ to a nearby generic lattice ideal, answering a question posed by Miller and Sturmfels. Our algorithm is…

Let $I \subseteq R = \mathbb{K}[x_1,\ldots,x_n]$ be a toric ideal, i.e., a binomial prime ideal. We investigate when the ideal $I$ can be "split" into the sum of two smaller toric ideals. For a general toric ideal $I$, we give a sufficient…

Characteristic imsets are 0-1 vectors which correspond to Markov equivalence classes of directed acyclic graphs. The study of their convex hull, named the characteristic imset polytope, has led to new and interesting geometric perspectives…

We study the interplay between chip-firing games and potential theory on graphs, characterizing reduced divisors ($G$-parking functions) on graphs as the solution to an energy (or potential) minimization problem and providing an algorithm…

The edges of any hypergraph parametrize a monomial algebra called the edge subring of the hypergraph. We study presentation ideals of these edge subrings, and describe their generators in terms of balanced walks on hypergraphs. Our results…

We use a Gr\"obner basis technique first introduced by Knutson, Miller and Yong to study the interplay between properties of a graph $G$ and algebraic properties of the toric ideal that it defines. We first recover a well-known height…

To any toric ideal $I_A$, encoded by an integer matrix $A$, we associate a matroid structure called {\em the bouquet graph} of $A$ and introduce another toric ideal called {\em the bouquet ideal} of $A$. We show how these objects capture…

Neural codes are binary codes in $\{0,1\}^n$; here we focus on the ones which represent the firing patterns of a type of neurons called place cells. There is much interest in determining which neural codes can be realized by a collection of…

We present families of tableaux which interpolate between the classical semi-standard Young tableaux and matching field tableaux. Algebraically, this corresponds to SAGBI bases of Pl\"ucker algebras. We show that each such family of…

We study the family of graphs whose number of primitive cycles equals its cycle rank. It is shown that this family is precisely the family of ring graphs. Then we study the complete intersection property of toric ideals of bipartite graphs…

In this paper, we study a class of toric ideals obtained by using some geometric data of ADE trees which are the minimal resolution graphs of rational surface singularities. We compute explicit Gr\"obner bases for these toric ideals that…

In this paper, we introduce and study families of squarefree monomial ideals called clique ideals and independence ideals that can be associated to a finite graph. A family of clique ideals with linear resolutions has been characterized.…

We study the vanishing ideal of the parametrized algebraic toric associated to the complete multipartite graph $\G=\mathcal{K}_{\alpha_1,...,\alpha_r}$ over a finite field of order $q$. We give an explicit family of binomial generators for…

Let $I_G$ be the toric ideal of a graph $G$. We characterize in graph theoretical terms the primitive, the minimal, the indispensable and the fundamental binomials of the toric ideal $I_G$.

We introduce some determinantal ideals of the generalized Laplacian matrix associated to a digraph G, that we call critical ideals of G. Critical ideals generalize the critical group and the characteristic polynomials of the adjacency and…

We study a family $\mathcal{B}$ of pseudo-multipartite graphs indexed by staircase partitions. They are realised from the reduced words of certain class of permutations. We investigate the vertex proper colouring of these graphs and give…

Let I be a toric ideal. We say I is robust if its universal Groebner basis is a minimal generating set. We show that any robust toric ideal arising from a graph G is also minimally generated by its Graver basis. We then completely…