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Molecular optimization, which aims to discover improved molecules from a vast chemical search space, is a critical step in chemical development. Various artificial intelligence technologies have demonstrated high effectiveness and…

Chemical Physics · Physics 2024-11-26 Xin Xia , Yajie Zhang , Xiangxiang Zeng , Xingyi Zhang , Chunhou Zheng , Yansen Su

Recently, there has been a growing interest among researchers in understanding molecules and their textual descriptions through molecule language models (MoLM). However, despite some early promising developments, the advancement of MoLM…

Artificial Intelligence · Computer Science 2024-07-24 Namkyeong Lee , Siddhartha Laghuvarapu , Chanyoung Park , Jimeng Sun

Multi-omic datasets offer opportunities for improved biomarker discovery in cancer research, but their high dimensionality and limited sample sizes make identifying compact and effective biomarker panels challenging. Feature selection in…

Genomics · Quantitative Biology 2026-04-02 Luca Cattelani , Vittorio Fortino

Multimodal Large Language Models (MLLMs) have made notable advances in visual understanding, yet their abilities to recognize objects modified by specific attributes remain an open question. To address this, we explore MLLMs' reasoning…

Computer Vision and Pattern Recognition · Computer Science 2024-11-28 Jiaxuan Li , Junwen Mo , MinhDuc Vo , Akihiro Sugimoto , Hideki Nakayama

Lead optimization is a pivotal task in the drug design phase within the drug discovery lifecycle. The primary objective is to refine the lead compound to meet specific molecular properties for progression to the subsequent phase of…

Biomolecules · Quantitative Biology 2024-07-22 Siddartha Reddy N , Sai Prakash MV , Varun V , Vishal Vaddina , Saisubramaniam Gopalakrishnan

In this paper we systematically study the importance, i.e., the influence on performance, of the main design elements that differentiate scalarizing functions-based multiobjective evolutionary algorithms (MOEAs). This class of MOEAs…

Neural and Evolutionary Computing · Computer Science 2017-03-29 Mansoureh Aghabeig , Andrzej Jaszkiewicz

Software systems nowadays are complex and difficult to maintain due to continuous changes and bad design choices. To handle the complexity of systems, software products are, in general, decomposed in terms of packages/modules containing…

Software Engineering · Computer Science 2020-09-15 Mohamed Wiem Mkaouer , Marouane Kessentini , Adnan Shaout , Patrice Koligheu , Slim Bechikh , Kalyanmoy Deb , Ali Ouni

The analysis of vast amounts of data constitutes a major challenge in modern high energy physics experiments. Machine learning (ML) methods, typically trained on simulated data, are often employed to facilitate this task. Several choices…

High Energy Physics - Experiment · Physics 2021-02-25 Laurits Tani , Diana Rand , Christian Veelken , Mario Kadastik

Gradient-based preference optimization methods for large language model (LLM) alignment suffer from preference collapse, converging to narrow behavioral modes while neglecting preference diversity. We introduce EvoPref, a multi-objective…

Neural and Evolutionary Computing · Computer Science 2026-05-12 Dongxin Guo , Jikun Wu , Siu Ming Yiu

The challenge in biomarker discovery using machine learning from omics data lies in the abundance of molecular features but scarcity of samples. Most feature selection methods in machine learning require evaluating various sets of features…

Quantitative Methods · Quantitative Biology 2025-01-03 Luca Cattelani , Vittorio Fortino

We search for new superhard B-N-O compounds with an iterative machine learning (ML) procedure, where ML models are trained using sample crystal structures from evolutionary algorithm. We first use cohesive energy to evaluate the…

Materials Science · Physics 2022-06-22 Wei-Chih Chen , Yogesh K. Vohra , Cheng-Chien Chen

Photonic inverse design has emerged as an indispensable engineering tool for complex optical systems. In many instances it is important to optimize for both material and geometry configurations, which results in complex non-smooth search…

Optics · Physics 2021-06-17 Jagrit Digani , Phillip Hon , Artur R. Davoyan

Quality-Diversity (QD) algorithms have recently gained traction as optimisation methods due to their effectiveness at escaping local optima and capability of generating wide-ranging and high-performing solutions. Recently, Multi-Objective…

Neural and Evolutionary Computing · Computer Science 2023-05-17 Hannah Janmohamed , Thomas Pierrot , Antoine Cully

The concurrent optimization of language models and instructional prompts presents a significant challenge for deploying efficient and effective AI systems, particularly when balancing performance against computational costs like token…

Neural and Evolutionary Computing · Computer Science 2026-02-26 Cláudio Lúcio do Val Lopes , Lucca Machado

Molecular discovery is a multi-objective optimization problem that requires identifying a molecule or set of molecules that balance multiple, often competing, properties. Multi-objective molecular design is commonly addressed by combining…

Quantitative Methods · Quantitative Biology 2023-10-17 Jenna C. Fromer , Connor W. Coley

We propose a two-stage multi-objective optimization framework for full scheme solar cell structure design and characterization, cost minimization and quantum efficiency maximization. We evaluated structures of 15 different cell designs…

Image enhancement methods often prioritize pixel level information, overlooking the semantic features. We propose a novel, unsupervised, fuzzy-inspired image enhancement framework guided by NSGA-II algorithm that optimizes image brightness,…

Computer Vision and Pattern Recognition · Computer Science 2025-05-19 Nirjhor Datta , Afroza Akther , M. Sohel Rahman

Large-scale sparse multi-objective optimization problems (LSMOPs) are prevalent in real-world applications, where optimal solutions typically contain only a few nonzero variables, such as in adversarial attacks, critical node detection, and…

Neural and Evolutionary Computing · Computer Science 2026-03-13 Shuai Shao , Yuhao Sun , Xing Chen , Ye Tian , Guan Wang , Jin Li

Optimizing conflicting molecular properties while strictly adhering to complex 3D structural constraints constitutes a challenging Constrained Multi-Objective Optimization Problem (CMOP). Traditional Evolutionary Algorithms (EAs) destroy…

Neural and Evolutionary Computing · Computer Science 2026-04-09 Ruiqing Sun , Dawei Feng , Sen Yang , Ronghang Wang , Huaiyuan Song , Bo Ding , Yijie Wang , Huaimin Wang

In machine learning and molecular design, there exist two approaches: discriminative and generative. In the discriminative approach dubbed forward design, the goal is to map a set of features/molecules to their respective electronics…

Chemical Physics · Physics 2019-04-24 Alain Tchagang , Julio Valdés