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This article introduces a highly parallel algorithm for molecular dynamics simulations with short-range forces on single node multi- and many-core systems. The algorithm is designed to achieve high parallel speedups for strongly…

Computational Physics · Physics 2013-11-20 R. Meyer

The use and location of memory in integrated circuits plays a key factor in their performance. Memory requires large physical area, access times limit overall system performance and connectivity can result in large fan-out. Modern FPGA…

Hardware Architecture · Computer Science 2020-03-25 Alexander E. Beasley

Hyperdimensional computing (HDC) is an emerging computational framework that takes inspiration from attributes of neuronal circuits such as hyperdimensionality, fully distributed holographic representation, and (pseudo)randomness. When…

Emerging Technologies · Computer Science 2020-04-10 Geethan Karunaratne , Manuel Le Gallo , Giovanni Cherubini , Luca Benini , Abbas Rahimi , Abu Sebastian

A key motivation in the development of Distributed Model Predictive Control (DMPC) is to accelerate centralized Model Predictive Control (MPC) for large-scale systems. DMPC has the prospect of scaling well by parallelizing computations…

Optimization and Control · Mathematics 2025-04-16 Gösta Stomberg , Maurice Raetsch , Alexander Engelmann , Timm Faulwasser

Anisotropic mesh adaptation is studied for linear finite element solution of 3D anisotropic diffusion problems. The M-uniform mesh approach is used, where an anisotropic adaptive mesh is generated as a uniform one in the metric specified by…

Numerical Analysis · Mathematics 2020-04-20 Xianping Li , Weizhang Huang

Most research on novel techniques for 3D Medical Image Segmentation (MIS) is currently done using Deep Learning with GPU accelerators. The principal challenge of such technique is that a single input can easily cope computing resources, and…

Machine Learning · Computer Science 2021-11-01 Josep Lluis Berral , Oriol Aranda , Juan Luis Dominguez , Jordi Torres

The aggregated unfitted finite element method (AgFEM) is a methodology recently introduced in order to address conditioning and stability problems associated with embedded, unfitted, or extended finite element methods. The method is based…

Numerical Analysis · Computer Science 2019-08-20 Francesc Verdugo , Alberto F. Martín , Santiago Badia

A simple method for improving cache efficiency of serial and parallel explicit finite procedure with application to casting solidification simulation over three-dimensional complex geometries is presented. The method is based on division of…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-05-19 Ruhollah Tavakoli

Data structures for efficient sampling from a set of weighted items are an important building block of many applications. However, few parallel solutions are known. We close many of these gaps both for shared-memory and distributed-memory…

Data Structures and Algorithms · Computer Science 2021-07-20 Lorenz Hübschle-Schneider , Peter Sanders

The auto differentiable simulation is a type of simulation that outputs of the simulation include not only the simulation result itself, but also their derivatives with respect to various input parameters. It provides an efficient method to…

Computational Physics · Physics 2025-12-01 Ji Qianga , Yue Hao , Allen Qiang , Jinyu Wan

Hyperdimensional computing (HDC) is an emerging computing paradigm that represents, manipulates, and communicates data using very long random vectors (aka hypervectors). Among different hardware platforms capable of executing HDC…

Hardware Architecture · Computer Science 2022-05-24 Robert Guirado , Abbas Rahimi , Geethan Karunaratne , Eduard Alarcón , Abu Sebastian , Sergi Abadal

Nature-inspired stochastic metamaterials with disordered and multiscale architectures have shown great promise towards extraordinary functionalities, including high mechanical resilience, stress modulation and biased stiffness…

Applied Physics · Physics 2025-11-14 Canhui Lin , Ke Xu , Chenli Zhou , Yubin Gao , Yingguang Li

Modern supercomputers allow the simulation of complex phenomena with increased accuracy. Eventually, this requires finer geometric discretizations with larger numbers of mesh elements. In this context, and extrapolating to the Exascale…

Computational Physics · Physics 2020-07-08 Ricard Borrell , Guillermo Oyarzun , Damien Dosimont , Guillaume Houzeaux

Motivated by large-scale optimization problems arising in the context of machine learning, there have been several advances in the study of asynchronous parallel and distributed optimization methods during the past decade. Asynchronous…

Machine Learning · Computer Science 2020-06-25 Mahmoud Assran , Arda Aytekin , Hamid Feyzmahdavian , Mikael Johansson , Michael Rabbat

The emergence of cloud computing provides a new computing paradigm for users -- massive and complex computing tasks can be outsourced to cloud servers. However, the privacy issues also follow. Fully homomorphic encryption shows great…

Cryptography and Security · Computer Science 2021-04-01 Lizhi Xiong , Wenhao Zhou , Zhihua Xia , Qi Gu , Jian Weng

A common paradigm for scientific computing is distributed message-passing systems, and a common approach to these systems is to implement them across clusters of high-performance workstations. As multi-core architectures become increasingly…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-05-01 Christine Task , Arun Chauhan

Overdecomposition has emerged as a powerful and sometimes essential technique in parallel programming. Many application domains or frameworks, including those based on adaptive mesh refinements, or tree codes use it. Charm++ is a parallel…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-14 Aditya Bhosale , Anant Jain , Shourya Goel , Ritvik Rao , Peddoju Sateesh Kumar , Laxmikant Kale

For the last thirty years, several Dynamic Memory Managers (DMMs) have been proposed. Such DMMs include first fit, best fit, segregated fit and buddy systems. Since the performance, memory usage and energy consumption of each DMM differs,…

Neural and Evolutionary Computing · Computer Science 2024-07-16 José L. Risco-Martín , David Atienza , J. Manuel Colmenar , Oscar Garnica

Modern HPC systems are increasingly relying on greater core counts and wider vector registers. Thus, applications need to be adapted to fully utilize these hardware capabilities. One class of applications that can benefit from this increase…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-16 James Vance , Zhen-Hao Xu , Nikita Tretyakov , Torsten Stuehn , Markus Rampp , Sebastian Eibl , Christoph Junghans , André Brinkmann

Handling the ever-increasing complexity of mesh generation codes along with the intricacies of newer hardware often results in codes that are both difficult to comprehend and maintain. Different facets of codes such as thread management and…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-30 Christos Tsolakis , Polykarpos Thomadakis , Nikos Chrisochoides
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