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Sparse autoencoders (SAEs) aim to disentangle model activations into monosemantic, human-interpretable features. In practice, learned features are often redundant and vary across training runs and sparsity levels, which makes…

Machine Learning · Computer Science 2026-01-01 Cristina P. Martin-Linares , Jonathan P. Ling

Predicting protein function from amino acid sequence remains a central challenge in data-scarce (low-$N$) regimes, limiting machine learning-guided protein design when only small amounts of assay-labeled sequence-function data are…

Machine Learning · Computer Science 2025-08-27 Darin Tsui , Kunal Talreja , Amirali Aghazadeh

Improving Sparse Autoencoders (SAEs) requires benchmarks that can precisely validate architectural innovations. However, current SAE benchmarks on LLMs are often too noisy to differentiate architectural improvements, and current synthetic…

Machine Learning · Computer Science 2026-02-17 David Chanin , Adrià Garriga-Alonso

Sparse dictionary learning (and, in particular, sparse autoencoders) attempts to learn a set of human-understandable concepts that can explain variation on an abstract space. A basic limitation of this approach is that it neither exploits…

Computation and Language · Computer Science 2025-06-03 Mark Muchane , Sean Richardson , Kiho Park , Victor Veitch

Sparse autoencoders (SAEs) enable feature-level mechanistic interpretability and activation steering in large language models (LLMs), but SAE-based language control remains unreliable in multilingual settings: most SAEs are trained on…

Computation and Language · Computer Science 2026-05-25 Yusser Al Ghussin , Daniil Gurgurov , Tanja Baeumel , Josef van Genabith , Patrick Schramowski , Simon Ostermann

Sparse autoencoders (SAEs) have become central to mechanistic interpretability, decomposing transformer activations into monosemantic features. Yet existing analyses characterise features almost exclusively through top-activating token…

Artificial Intelligence · Computer Science 2026-05-08 Ruben Fernandez-Boullon , Pablo Magariños-Docampo , Javier Perez-Robles

Preference learning in large language models relies on reward models as proxies for human judgment. However, these models frequently exhibit preference instability, producing contradictory preference assignments in response to subtle,…

Machine Learning · Computer Science 2026-05-19 Shunchang Liu , Xin Chen , Belen Martin Urcelay , Francesco Croce

Extreme neural network sparsification (90% activation reduction) presents a critical challenge for mechanistic interpretability: understanding whether interpretable features survive aggressive compression. This work investigates feature…

Machine Learning · Computer Science 2026-04-10 Dip Roy , Rajiv Misra , Sanjay Kumar Singh

Background: Single-cell foundation models such as Geneformer and scGPT encode rich biological information, but whether this includes causal regulatory logic rather than statistical co-expression remains unclear. Sparse autoencoders (SAEs)…

Genomics · Quantitative Biology 2026-03-04 Ihor Kendiukhov

Sparse autoencoders (SAEs) have been successfully used to discover sparse and human-interpretable representations of the latent activations of LLMs. However, we would ultimately like to understand the computations performed by LLMs and not…

Machine Learning · Computer Science 2025-06-09 Lucy Farnik , Tim Lawson , Conor Houghton , Laurence Aitchison

The Linear Representation Hypothesis asserts that the embeddings learned by neural networks can be understood as linear combinations of features corresponding to high-level concepts. Based on this ansatz, sparse autoencoders (SAEs) have…

Machine Learning · Computer Science 2026-01-29 Chiraag Kaushik , Davis Barch , Andrea Fanelli

We present SAE-BrainMap, a novel framework that directly aligns deep learning visual model representations with voxel-level fMRI responses using sparse autoencoders (SAEs). First, we train layer-wise SAEs on model activations and compute…

Neurons and Cognition · Quantitative Biology 2025-06-16 Ziming Mao , Jia Xu , Zeqi Zheng , Haofang Zheng , Dabing Sheng , Yaochu Jin , Guoyuan Yang

While sparse autoencoders (SAEs) successfully extract interpretable features from language models, applying them to audio generation faces unique challenges: audio's dense nature requires compression that obscures semantic meaning, and…

Machine Learning · Computer Science 2025-10-31 Nathan Paek , Yongyi Zang , Qihui Yang , Randal Leistikow

Despite their impressive performance, generative image models trained on large-scale datasets frequently fail to produce images with seemingly simple concepts -- e.g., human hands or objects appearing in groups of four -- that are…

Graphics · Computer Science 2025-06-25 Matyas Bohacek , Thomas Fel , Maneesh Agrawala , Ekdeep Singh Lubana

Recent work by Anthropic on Mechanistic interpretability claims to understand and control Large Language Models by extracting human-interpretable features from their neural activation patterns using sparse autoencoders (SAEs). If…

Machine Learning · Computer Science 2026-01-07 Raphael Ronge , Markus Maier , Frederick Eberhardt

Determining company similarity is a vital task in finance, underpinning risk management, hedging, and portfolio diversification. Practitioners often rely on sector and industry classifications such as SIC and GICS codes to gauge similarity,…

Sparse Autoencoders (SAEs) have shown to find interpretable features in neural networks from polysemantic neurons caused by superposition. Previous work has shown SAEs are an effective tool to extract interpretable features from the early…

Computer Vision and Pattern Recognition · Computer Science 2025-04-17 Matthew Bozoukov

Existing works are dedicated to untangling atomized numerical components (features) from the hidden states of Large Language Models (LLMs). However, they typically rely on autoencoders constrained by some training-time regularization on…

Machine Learning · Computer Science 2026-02-13 Hakaze Cho , Haolin Yang , Yanshu Li , Brian M. Kurkoski , Naoya Inoue

Sparse autoencoders are a promising new approach for decomposing language model activations for interpretation and control. They have been applied successfully to vision transformer image encoders and to small-scale diffusion models.…

Machine Learning · Computer Science 2025-07-14 Stepan Shabalin , Ayush Panda , Dmitrii Kharlapenko , Abdur Raheem Ali , Yixiong Hao , Arthur Conmy

Continuing advances in neural interfaces have enabled simultaneous monitoring of spiking activity from hundreds to thousands of neurons. To interpret these large-scale data, several methods have been proposed to infer latent dynamic…

Machine Learning · Computer Science 2019-08-23 Mohammad Reza Keshtkaran , Chethan Pandarinath
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