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Motivation: Genomic data analyses such as Genome-Wide Association Studies (GWAS) or Hi-C studies are often faced with the problem of partitioning chromosomes into successive regions based on a similarity matrix of high-resolution,…

Statistics Theory · Mathematics 2019-02-06 Christophe Ambroise , Alia Dehman , Pierre Neuvial , Guillem Rigaill , Nathalie Vialaneix

Clustering is a fundamental analysis tool aiming at classifying data points into groups based on their similarity or distance. It has found successful applications in all natural and social sciences, including biology, physics, economics,…

Information Retrieval · Computer Science 2021-02-24 Wen-Bo Xie , Yan-Li Lee , Cong Wang , Duan-Bing Chen , Tao Zhou

Acyclic digraphs arise in many natural and artificial processes. Among the broader set, dynamic citation networks represent a substantively important form of acyclic digraphs. For example, the study of such networks includes the spread of…

Physics and Society · Physics 2011-07-26 Michael J. Bommarito , Daniel Martin Katz , Jon Zelner , James H. Fowler

There are many clustering methods, such as hierarchical clustering method. Most of the approaches to the clustering of variables encountered in the literature are of hierarchical type. The great majority of hierarchical approaches to the…

Databases · Computer Science 2011-01-25 Rahmat Widia Sembiring , Jasni Mohamad Zain , Abdullah Embong

Agglomerative hierarchical clustering (AHC) is one of the popular clustering approaches. Existing AHC methods, which are based on a distance measure, have one key issue: it has difficulty in identifying adjacent clusters with varied…

Machine Learning · Computer Science 2024-01-30 Xin Han , Ye Zhu , Kai Ming Ting , Gang Li

Clustering is an important part of many modern data analysis pipelines, including network analysis and data retrieval. There are many different clustering algorithms developed by various communities, and it is often not clear which…

Machine Learning · Computer Science 2019-10-04 Maria-Florina Balcan , Travis Dick , Manuel Lang

Linkage methods are among the most popular algorithms for hierarchical clustering. Despite their relevance the current knowledge regarding the quality of the clustering produced by these methods is limited. Here, we improve the currently…

Machine Learning · Computer Science 2024-05-03 Sanjoy Dasgupta , Eduardo Laber

The ever-increasing data scale of user-item interactions makes it challenging for an effective and efficient recommender system. Recently, hash-based collaborative filtering (Hash-CF) approaches employ efficient Hamming distance of learned…

Information Retrieval · Computer Science 2022-05-25 Fan Wang , Weiming Liu , Chaochao Chen , Mengying Zhu , Xiaolin Zheng

Energy companies often implement various demand response (DR) programs to better match electricity demand and supply by offering the consumers incentives to reduce their demand during critical periods. Classifying clients according to their…

Machine Learning · Computer Science 2022-10-19 Fadi AlMahamid , Katarina Grolinger

This paper considers metric spaces where distances between a pair of nodes are represented by distance intervals. The goal is to study methods for the determination of hierarchical clusters, i.e., a family of nested partitions indexed by a…

Social and Information Networks · Computer Science 2016-10-17 Weiyu Huang , Alejandro Ribeiro

We consider the problem of maintaining a hierarchical agglomerative clustering (HAC) in the dynamic setting, when the input is subject to point insertions and deletions. We introduce DynHAC - the first dynamic HAC algorithm for the popular…

Data Structures and Algorithms · Computer Science 2025-01-15 Shangdi Yu , Laxman Dhulipala , Jakub Łącki , Nikos Parotsidis

The primary goal in cluster analysis is to discover natural groupings of objects. The field of cluster analysis is crowded with diverse methods that make special assumptions about data and address different scientific aims. Despite its…

Genomics · Quantitative Biology 2018-06-07 Gary K. Chen , Eric Chi , John Ranola , Kenneth Lange

Clustering is a popular machine learning technique for data mining that can process and analyze datasets to automatically reveal sample distribution patterns. Since the ubiquitous categorical data naturally lack a well-defined metric space…

Machine Learning · Computer Science 2025-09-01 Yiqun Zhang , Mingjie Zhao , Hong Jia , Yang Lu , Mengke Li , Yiu-ming Cheung

The paper outlines the principles of construction of a broad class of hierarchical aggregation algorithms of cluster analysis, essentially based on minimum distance mergers, which are derived from the general bi-partial objective function.…

Other Statistics · Statistics 2026-02-25 Jan W. Owsiński

Hierarchical clustering is a class of algorithms that seeks to build a hierarchy of clusters. It has been the dominant approach to constructing embedded classification schemes since it outputs dendrograms, which capture the hierarchical…

Machine Learning · Statistics 2018-08-28 Xiaofei Ma , Satya Dhavala

After generalizing the concept of clusters to incorporate clusters that are linked to other clusters through some relatively narrow bridges, an approach for detecting patches of separation between these clusters is developed based on an…

Computer Vision and Pattern Recognition · Computer Science 2020-01-10 Luciano da F. Costa

We consider the problem of fast time-series data clustering. Building on previous work modeling the correlation-based Hamiltonian of spin variables we present an updated fast non-expensive Agglomerative Likelihood Clustering algorithm…

Computational Finance · Quantitative Finance 2022-03-22 Lionel Yelibi , Tim Gebbie

This paper focuses on the multi-view clustering, which aims to promote clustering results with multi-view data. Usually, most existing works suffer from the issues of parameter selection and high computational complexity. To overcome these…

Machine Learning · Computer Science 2020-10-16 Qinghai Zheng , Jihua Zhu , Shuangxun Ma

Hierarchical classification is a crucial task in many applications, where objects are organized into multiple levels of categories. However, conventional classification approaches often neglect inherent inter-class relationships at…

Computer Vision and Pattern Recognition · Computer Science 2025-10-02 Julius Ott , Nastassia Vysotskaya , Huawei Sun , Lorenzo Servadei , Robert Wille

Clustering is a data analysis method for extracting knowledge by discovering groups of data called clusters. Among these methods, state-of-the-art density-based clustering methods have proven to be effective for arbitrary-shaped clusters.…

Machine Learning · Computer Science 2023-10-26 Nabil El Malki , Robin Cugny , Olivier Teste , Franck Ravat