Related papers: Maximizing Diversity in (near-)Median String Selec…
We study approximation algorithms for variants of the \emph{median string} problem, which asks for a string that minimizes the sum of edit distances from a given set of $m$ strings of length $n$. Only the straightforward $2$-approximation…
Many consensus string problems are based on Hamming distance. We replace Hamming distance by the more flexible (e.g., easily coping with different input string lengths) dynamic time warping distance, best known from applications in time…
Strings are a natural representation of biological data such as DNA, RNA and protein sequences. The problem of finding a string that summarizes a set of sequences has direct application in relative compression algorithms for genome and…
The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants…
The problem of finding a center string that is `close' to every given string arises and has many applications in computational biology and coding theory. This problem has two versions: the Closest String problem and the Closest Substring…
The Median String Problem is W[1]-Hard under the Levenshtein distance, thus, approximation heuristics are used. Perturbation-based heuristics have been proved to be very competitive as regards the ratio approximation accuracy/convergence…
In this paper, we study for the first time the Diverse Longest Common Subsequences (LCSs) problem under Hamming distance. Given a set of a constant number of input strings, the problem asks to decide if there exists some subset $\mathcal X$…
Diversity maximization aims to select a diverse and representative subset of items from a large dataset. It is a fundamental optimization task that finds applications in data summarization, feature selection, web search, recommender…
In this paper we consider measures of similarity between two sets of strings built up using the Hamming distance and tools of persistence homology as a basis. First we describe the construction of the \v Cech filtration adjoined to the set…
The streaming max-min diversification problem concerns the selection of a limited and diverse sample of items out of a data stream of known finite length. The objective to be maximized is the minimum distance among any pair of selected…
One of the most well-known and simplest models for diversity maximization is the Max-Min Diversification (MMD) model, which has been extensively studied in the data mining and database literature. In this paper, we initiate the study of the…
Diversity is an important principle in data selection and summarization, facility location, and recommendation systems. Our work focuses on maximizing diversity in data selection, while offering fairness guarantees. In particular, we offer…
We report (to our knowledge) the first evaluation of Constraint Satisfaction as a computational framework for solving closest string problems. We show that careful consideration of symbol occurrences can provide search heuristics that…
We study the fundamental problem of finding the best string to represent a given set, in the form of the Closest String problem: Given a set $X \subseteq \Sigma^d$ of $n$ strings, find the string $x^*$ minimizing the radius of the smallest…
Edit distance is a fundamental measure of distance between strings and has been widely studied in computer science. While the problem of estimating edit distance has been studied extensively, the equally important question of actually…
The diversity across outputs generated by LLMs shapes perception of their quality and utility. High lexical diversity is often desirable, but there is no standard method to measure this property. Templated answer structures and ``canned''…
Given a dataset of points in a metric space and an integer $k$, a diversity maximization problem requires determining a subset of $k$ points maximizing some diversity objective measure, e.g., the minimum or the average distance between two…
We revisit a fundamental problem in string matching: given a pattern of length m and a text of length n, both over an alphabet of size $\sigma$, compute the Hamming distance between the pattern and the text at every location. Several…
Diversity maximization is a fundamental problem with wide applications in data summarization, web search, and recommender systems. Given a set $X$ of $n$ elements, it asks to select a subset $S$ of $k \ll n$ elements with maximum…
The algorithmic tasks of computing the Hamming distance between a given pattern of length $m$ and each location in a text of length $n$ is one of the most fundamental algorithmic tasks in string algorithms. Unfortunately, there is evidence…