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Graph embedding algorithms are used to efficiently represent (encode) a graph in a low-dimensional continuous vector space that preserves the most important properties of the graph. One aspect that is often overlooked is whether the graph…

Machine Learning · Computer Science 2020-01-31 Zekarias T. Kefato , Nasrullah Sheikh , Alberto Montresor

Activation steering -- adding a vector to a model's residual stream to modify its behavior -- is widely used in safety evaluations as if the model cannot detect the intervention. We test this assumption, introducing steering awareness: a…

Computation and Language · Computer Science 2026-03-20 Joshua Fonseca Rivera , David Demitri Africa

Coherent gate errors are a concern in many proposed quantum computing architectures. These errors can be effectively handled through composite pulse sequences for single-qubit gates, however, such techniques are less feasible for entangling…

The inference of gene regulatory networks (GRNs) is a foundational stride towards deciphering the fundamentals of complex biological systems. Inferring a possible regulatory link between two genes can be formulated as a link prediction…

Machine Learning · Computer Science 2025-04-25 Binon Teji , Swarup Roy

The inner workings of neural networks can be better understood if we can fully decipher the information encoded in neural activations. In this paper, we argue that this information is embodied by the subset of inputs that give rise to…

Machine Learning · Computer Science 2024-11-05 Xinting Huang , Madhur Panwar , Navin Goyal , Michael Hahn

Circuit representation learning has shown promising results in advancing the field of Electronic Design Automation (EDA). Existing models, such as DeepGate Family, primarily utilize Graph Neural Networks (GNNs) to encode circuit netlists…

Machine Learning · Computer Science 2024-07-17 Zhengyuan Shi , Ziyang Zheng , Sadaf Khan , Jianyuan Zhong , Min Li , Qiang Xu

Understanding peptide properties is often assumed to require modeling long-range molecular interactions, motivating the use of complex graph neural networks and pretrained transformers. Yet, whether such long-range dependencies are…

Biomolecules · Quantitative Biology 2026-03-11 Jakub Adamczyk , Piotr Ludynia , Wojciech Czech

Cognitive studies and artificial intelligence have developed distinct models for various inferential mechanisms (categorization, induction, abduction, causal inference, contrast, merge, ...). Yet, both natural and artificial views on…

Artificial Intelligence · Computer Science 2025-10-28 Giovanni Sileno , Jean-Louis Dessalles

Branched structures that evolve over time critically determine the function of various natural and engineered systems, including growing vasculature, neural arborization, pulmonary networks such as lungs, river basins, power distribution…

Statistical Mechanics · Physics 2026-03-04 Fabian H. Kreten , Ludger Santen , Reza Shaebani

Tensor networks impose a notion of geometry on the entanglement of a quantum system. In some cases, this geometry is found to reproduce key properties of holographic dualities, and subsequently much work has focused on using tensor networks…

Strongly Correlated Electrons · Physics 2017-10-04 Katharine Hyatt , James R. Garrison , Bela Bauer

We show that viewing graphs as sets of node features and incorporating structural and positional information into a transformer architecture is able to outperform representations learned with classical graph neural networks (GNNs). Our…

Machine Learning · Computer Science 2021-06-11 Grégoire Mialon , Dexiong Chen , Margot Selosse , Julien Mairal

Mechanistic interpretability often identifies circuits inside Transformer models, but explanations of those circuits are usually validated through examples, ablations, and manual reasoning. This leaves a gap between finding a plausible…

Machine Learning · Computer Science 2026-05-26 Neel Somani

Electrical circuits offer a unique platform to explore physical phenomena, from topology to non-Hermitian effects. Investigations of the fundamental properties of this metamaterial platform are crucial to distinguish observed/measured…

Mesoscale and Nanoscale Physics · Physics 2025-08-05 Haydar Sahin

Algorithmic reasoning requires capabilities which are most naturally understood through recurrent models of computation, like the Turing machine. However, Transformer models, while lacking recurrence, are able to perform such reasoning…

Machine Learning · Computer Science 2023-05-03 Bingbin Liu , Jordan T. Ash , Surbhi Goel , Akshay Krishnamurthy , Cyril Zhang

Fingerprint recognition has drawn a lot of attention during last decades. Different features and algorithms have been used for fingerprint recognition in the past. In this paper, a powerful image representation called scattering…

Computer Vision and Pattern Recognition · Computer Science 2015-11-30 Shervin Minaee , Yao Wang

Topology reasoning aims to provide a precise understanding of road scenes, enabling autonomous systems to identify safe and efficient routes. In this paper, we present RoadPainter, an innovative approach for detecting and reasoning the…

Computer Vision and Pattern Recognition · Computer Science 2024-07-23 Zhongxing Ma , Shuang Liang , Yongkun Wen , Weixin Lu , Guowei Wan

Automated mechanistic interpretation research has attracted great interest due to its potential to scale explanations of neural network internals to large models. Existing automated circuit discovery work relies on activation patching or…

Artificial Intelligence · Computer Science 2025-03-04 Aliyah R. Hsu , Georgia Zhou , Yeshwanth Cherapanamjeri , Yaxuan Huang , Anobel Y. Odisho , Peter R. Carroll , Bin Yu

The Transformer architecture is shown to provide a powerful framework as an end-to-end model for building expression trees from online handwritten gestures corresponding to glyph strokes. In particular, the attention mechanism was…

Computation and Language · Computer Science 2022-11-07 Mirco Ramo , Guénolé C. M. Silvestre

Transformers demonstrate impressive performance on a range of reasoning benchmarks. To evaluate the degree to which these abilities are a result of actual reasoning, existing work has focused on developing sophisticated benchmarks for…

Machine Learning · Computer Science 2024-07-02 Jannik Brinkmann , Abhay Sheshadri , Victor Levoso , Paul Swoboda , Christian Bartelt

Circuit graph discovery has emerged as a fundamental approach to elucidating the skill mechanistic of language models. Despite the output faithfulness of circuit graphs, they suffer from atomic ablation, which causes the loss of causal…

Computation and Language · Computer Science 2025-11-11 Hang Chen , Jiaying Zhu , Xinyu Yang , Wenya Wang