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Nowadays, exponential random graphs (ERGs) are among the most widely-studied network models. Different analytical and numerical techniques for ERG have been developed that resulted in the well-established theory with true predictive power.…

Physics and Society · Physics 2014-04-08 Agata Fronczak

Knowledge Graph (KG) generation requires models to learn complex semantic dependencies between triples while maintaining domain validity constraints. Unlike link prediction, which scores triples independently, generative models must capture…

Artificial Intelligence · Computer Science 2026-02-09 Thiviyan Thanapalasingam , Antonis Vozikis , Peter Bloem , Paul Groth

We provide new connectivity results for {\em vertex-random graphs} or {\em random annulus graphs} which are significant generalizations of random geometric graphs. Random geometric graphs (RGG) are one of the most basic models of random…

Discrete Mathematics · Computer Science 2020-05-18 Sainyam Galhotra , Arya Mazumdar , Soumyabrata Pal , Barna Saha

Recent advances in Retrieval-Augmented Generation (RAG) have revolutionized knowledge-intensive tasks, yet traditional RAG methods struggle when the search space is unknown or when documents are semi-structured or structured. We introduce a…

Information Retrieval · Computer Science 2026-03-25 Manie Tadayon , Mayank Gupta

We present a data structure called a history graph that offers a practical basis for the analysis of genome evolution. It conceptually simplifies the study of parsimonious evolutionary histories by representing both substitutions and double…

Genomics · Quantitative Biology 2014-05-13 Benedict Paten , Daniel R. Zerbino , Glenn Hickey , David Haussler

Directed Acyclic Graphs (DAGs) are central to uncovering causal structure in complex systems, yet learning a single DAG from data is often challenging: model uncertainty, finite samples, and a combinatorially large search space frequently…

Methodology · Statistics 2026-05-19 Yunan Wu , Yue Wang , Chunlin Li , Chenglong Ye

This study aims to optimize the existing retrieval-augmented generation model (RAG) by introducing a graph structure to improve the performance of the model in dealing with complex knowledge reasoning tasks. The traditional RAG model has…

Information Retrieval · Computer Science 2024-11-07 Yuxin Dong , Shuo Wang , Hongye Zheng , Jiajing Chen , Zhenhong Zhang , Chihang Wang

The rapid advancements in large language models (LLMs) have ignited interest in the temporal knowledge graph (tKG) domain, where conventional embedding-based and rule-based methods dominate. The question remains open of whether pre-trained…

Computation and Language · Computer Science 2024-04-18 Ruotong Liao , Xu Jia , Yangzhe Li , Yunpu Ma , Volker Tresp

This systematic review of the research literature on retrieval-augmented generation (RAG) provides a focused analysis of the most highly cited studies published between 2020 and May 2025. A total of 128 articles met our inclusion criteria.…

Digital Libraries · Computer Science 2025-09-10 Andrew Brown , Muhammad Roman , Barry Devereux

Retrieval-Augmented Generation (RAG) has become a core paradigm for enhancing factual grounding and multi-hop reasoning in Large Language Models (LLMs). Traditional text-based RAG often retrieves logically irrelevant pseudo-evidence, while…

Artificial Intelligence · Computer Science 2026-05-08 Jiarui Zhong , Hong Cai Chen

Recent work at the intersection of formal language theory and graph theory has explored graph grammars for graph modeling. However, existing models and formalisms can only operate on homogeneous (i.e., untyped or unattributed) graphs. We…

Social and Information Networks · Computer Science 2023-01-06 Satyaki Sikdar , Neil Shah , Tim Weninger

The cosmic X-ray background (XRB) spectrum and active galaxy number counts encode essential information about the spectral evolution of active galactic nuclei (AGNs) and have been successfully modeled by XRB synthesis models for many years.…

High Energy Astrophysical Phenomena · Physics 2019-04-24 M. S. Avirett-Mackenzie , D. R. Ballantyne

Knowledge graphs (KGs) represent connections and relationships between real-world entities. We propose a link prediction framework for KGs named Enrichment-Driven GrAph Reasoner (EDGAR), which infers new edges by mining entity-local rules.…

Information Theory · Computer Science 2024-11-14 Olawumi Olasunkanmi , Evan Morris , Yaphet Kebede , Harlin Lee , Stanley Ahalt , Alexander Tropsha , Chris Bizon

Although Retrieval-Augmented Generation (RAG) systems have been widely applied, the privacy and security risks they face, such as data leakage and data poisoning, have not been systematically addressed yet. Existing defense strategies…

Cryptography and Security · Computer Science 2025-08-05 Pengcheng Zhou , Yinglun Feng , Zhongliang Yang

Graph retrieval-augmented generation (GraphRAG) has emerged as a powerful paradigm for enhancing large language models (LLMs) with external knowledge. It leverages graphs to model the hierarchical structure between specific concepts,…

Computation and Language · Computer Science 2026-02-24 Zhishang Xiang , Chuanjie Wu , Qinggang Zhang , Shengyuan Chen , Zijin Hong , Xiao Huang , Jinsong Su

We introduce a novel graph-based Retrieval-Augmented Generation (RAG) framework specifically designed for the medical domain, called \textbf{MedGraphRAG}, aimed at enhancing Large Language Model (LLM) capabilities for generating…

Computer Vision and Pattern Recognition · Computer Science 2024-10-17 Junde Wu , Jiayuan Zhu , Yunli Qi , Jingkun Chen , Min Xu , Filippo Menolascina , Vicente Grau

Large Language Models (LLMs) have significantly enhanced conversational Artificial Intelligence(AI) chatbots; however, domain-specific accuracy and the avoidance of factual inconsistencies remain pressing challenges, particularly for large…

Information Retrieval · Computer Science 2025-09-24 Olalekan K. Akindele , Bhupesh Kumar Mishra , Kenneth Y. Wertheim

In this paper, we utilize a variant of the scaled relative graph (SRG), referred to as the $\theta$-symmetric SRG, to develop a graphical stability criterion for the feedback interconnection of a cascade of systems. A crucial…

Systems and Control · Electrical Eng. & Systems 2025-10-09 Xiaokan Yang , Ding Zhang , Wei Chen , Li Qiu

Recent advances in computational methods for intractable models have made network data increasingly amenable to statistical analysis. Exponential random graph models (ERGMs) emerged as one of the main families of models capable of capturing…

Computation · Statistics 2021-04-07 Alberto Caimo , Lampros Bouranis , Robert Krause , Nial Friel

The recent deep generative models for static graphs that are now being actively developed have achieved significant success in areas such as molecule design. However, many real-world problems involve temporal graphs whose topology and…

Machine Learning · Computer Science 2021-03-09 Liming Zhang , Liang Zhao , Shan Qin , Dieter Pfoser