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Controllable generation is a fundamental task in NLP with many applications, providing a basis for function calling to agentic communication. However, even state-of-the-art autoregressive Large Language Models (LLMs) today exhibit…

Computation and Language · Computer Science 2025-09-29 Zhen Xiong , Yujun Cai , Zhecheng Li , Yiwei Wang

Generative approaches powered by large language models (LLMs) have demonstrated emergent abilities in tasks that require complex reasoning abilities. Yet the generative nature still makes the generated content suffer from hallucinations,…

Computation and Language · Computer Science 2023-11-07 Zilin Xiao , Ming Gong , Jie Wu , Xingyao Zhang , Linjun Shou , Jian Pei , Daxin Jiang

The future development of an AI scientist, a tool that is capable of integrating a variety of experimental data and generating testable hypotheses, holds immense potential. So far, bespoke machine learning models have been created to…

Quantitative Methods · Quantitative Biology 2024-03-05 Tyler D. Ross , Ashwin Gopinath

Diffusion language models promise parallel generation, yet still lag behind autoregressive (AR) models in quality. We stem this gap to a failure of introspective consistency: AR models agree with their own generations, while DLMs often do…

Inevitable domain and task discrepancies in real-world scenarios can impair the generalization performance of the pre-trained deep models for medical data. Therefore, we audaciously propose that we should build a general-purpose medical AI…

Computer Vision and Pattern Recognition · Computer Science 2023-03-14 Huahui Yi , Ziyuan Qin , Qicheng Lao , Wei Xu , Zekun Jiang , Dequan Wang , Shaoting Zhang , Kang Li

Large language models are increasingly used as computational tools for modeling human-like behavior. We introduce a behavioral induction framework that modifies model policies through fine-tuning on structured decision-making tasks: using…

Computation and Language · Computer Science 2026-05-22 Nicola Milano , Davide Marocco

Recent progress in language modeling has been driven not only by advances in neural architectures, but also through hardware and optimization improvements. In this paper, we revisit the neural probabilistic language model (NPLM)…

Computation and Language · Computer Science 2021-04-09 Simeng Sun , Mohit Iyyer

Unlocking deep and interpretable biological reasoning from complex genomic data remains a major AI challenge limiting scientific progress. While current DNA foundation models excel at representing sequences, they struggle with multi-step…

Large language models (LLMs) have shown potential as tools for scientific discovery. This has engendered growing interest in their use in humanistic disciplines, such as historical linguistics and literary studies. These fields often…

Computation and Language · Computer Science 2026-03-31 Elisabeth Fittschen , Sabrina Li , Tom Lippincott , Leshem Choshen , Craig Messner

Large language models (LLMs) have been widely adopted due to their remarkable performance across various applications, driving the accelerated development of a large number of diverse models. However, these individual LLMs show limitations…

Computation and Language · Computer Science 2025-06-13 Kaushal Kumar Maurya , KV Aditya Srivatsa , Ekaterina Kochmar

Can we leverage LLMs to model the process of discovering novel language model (LM) architectures? Inspired by real research, we propose a multi-agent LLM approach that simulates the conventional stages of research, from ideation and…

Artificial Intelligence · Computer Science 2025-06-26 Junyan Cheng , Peter Clark , Kyle Richardson

Large language models (LLMs) show promise for health applications when combined with behavioral sensing data. Traditional approaches convert sensor data into text prompts, but this process is prone to errors, computationally expensive, and…

Recent advances in Protein Language Models (PLMs) have transformed protein engineering, yet unlike their counterparts in Natural Language Processing (NLP), current PLMs exhibit a fundamental limitation: they excel in either Protein Language…

Computational Engineering, Finance, and Science · Computer Science 2025-09-16 Liuzhenghao Lv , Zongying Lin , Hao Li , Yuyang Liu , Jiaxi Cui , Calvin Yu-Chian Chen , Li Yuan , Yonghong Tian

In this work, we argue that large language models (LLMs), though trained to predict only the next token, exhibit emergent planning behaviors: $\textbf{their hidden representations encode future outputs beyond the next token}$. Through…

Computation and Language · Computer Science 2025-08-05 Zhichen Dong , Zhanhui Zhou , Zhixuan Liu , Chao Yang , Chaochao Lu

While recent research on natural language inference has considerably benefited from large annotated datasets, the amount of inference-related knowledge (including commonsense) provided in the annotated data is still rather limited. There…

Computation and Language · Computer Science 2021-09-10 Xiaoyu Yang , Xiaodan Zhu , Zhan Shi , Tianda Li

Recent 3D human generative models have achieved remarkable progress by learning 3D-aware GANs from 2D images. However, existing 3D human generative methods model humans in a compact 1D latent space, ignoring the articulated structure and…

Computer Vision and Pattern Recognition · Computer Science 2024-07-03 Tao Hu , Fangzhou Hong , Ziwei Liu

The intricate relationship between genetic variation and human diseases has been a focal point of medical research, evidenced by the identification of risk genes regarding specific diseases. The advent of advanced genome sequencing…

Quantitative Methods · Quantitative Biology 2024-01-19 Jiayu Chang , Shiyu Wang , Chen Ling , Zhaohui Qin , Liang Zhao

Pre-trained LLMs have demonstrated substantial capabilities across a range of conventional natural language processing (NLP) tasks, such as summarization and entity recognition. In this paper, we explore the application of LLMs in the…

Quantitative Methods · Quantitative Biology 2024-08-14 Kamyar Zeinalipour , Neda Jamshidi , Monica Bianchini , Marco Maggini , Marco Gori

Modern foundation models such as large language models (LLMs) and large multi-modal models (LMMs) require a massive amount of computational and memory resources. We propose a new framework to convert such LLMs/LMMs into a reduced-dimension…

Machine Learning · Computer Science 2025-05-27 Toshiaki Koike-Akino , Xiangyu Chen , Jing Liu , Ye Wang , Pu , Wang , Matthew Brand

Recent advancements in large language models (LLMs) have significantly improved Natural Language to SQL (NL2SQL) tasks, yet most NL2SQL systems continue to rely on the autoregressive (AR) paradigm. The highly structured nature of SQL makes…

Databases · Computer Science 2026-05-28 Peixian Ma , Xialie Zhuang , Jiantao Tan , Changlun Li , Ruirui Chen , Chengwei Qin