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Persistent Homology is a powerful tool in Topological Data Analysis (TDA) to capture topological properties of data succinctly at different spatial resolutions. For graphical data, shape, and structure of the neighborhood of individual data…

Social and Information Networks · Computer Science 2018-11-12 Sumit Bhatia , Bapi Chatterjee , Deepak Nathani , Manohar Kaul

Topological data analysis offers a robust way to extract useful information from noisy, unstructured data by identifying its underlying structure. Recently, an efficient quantum algorithm was proposed [Lloyd, Garnerone, Zanardi, Nat.…

(lecture delivered at the Congress of the Romanian mathematicians, Brasov, June 2011) Using graph representations a new class of computable topological invariants associated with a tame real or angle valued map were recently introduced,…

Algebraic Topology · Mathematics 2012-05-22 Dan Burghelea

Real-valued functions on geometric data -- such as node attributes on a graph -- can be optimized using descriptors from persistent homology, allowing the user to incorporate topological terms in the loss function. When optimizing a single…

Computational Geometry · Computer Science 2024-09-02 Luis Scoccola , Siddharth Setlur , David Loiseaux , Mathieu Carrière , Steve Oudot

We describe and analyze a numerical algorithm for computing the homology (Betti numbers and torsion coefficients) of semialgebraic sets given by Boolean formulas. The algorithm works in weak exponential time. This means that outside a…

Computational Geometry · Computer Science 2021-10-14 Peter Bürgisser , Felipe Cucker , Josué Tonelli-Cueto

In this paper we consider two aspects of the inverse problem of how to construct merge trees realizing a given barcode. Much of our investigation exploits a recently discovered connection between the symmetric group and barcodes in general…

Algebraic Topology · Mathematics 2021-07-27 Justin Curry , Jordan DeSha , Adélie Garin , Kathryn Hess , Lida Kanari , Brendan Mallery

The persistent Betti numbers are used in topological data analysis to infer the scales at which topological features appear and disappear in the filtration of a topological space. Most commonly by means of the corresponding barcode or…

Statistics Theory · Mathematics 2021-09-14 Magnus Bakke Botnan , Christian Hirsch

This paper investigates the propreties of the persistence diagrams stemming from almost surely continuous random processes on $[0,t]$. We focus our study on two variables which together characterize the barcode : the number of points of the…

Probability · Mathematics 2022-11-08 Daniel Perez

Descriptors play an important role in data-driven materials design. While most descriptors of crystalline materials emphasize structure and composition, they often neglect the electron density - a complex yet fundamental quantity that…

Materials Science · Physics 2025-06-18 Nathan J. Szymanski , Alexander Smith , Prodromos Daoutidis , Christopher J. Bartel

Interacting, self-propelled particles such as epithelial cells can dynamically self-organize into complex multicellular patterns, which are challenging to classify without a priori information. Classically, different phases and phase…

Quantitative Methods · Quantitative Biology 2021-01-19 Dhananjay Bhaskar , William Y. Zhang , Ian Y. Wong

In this paper, we formalize the notion of lambda-AT-model (where $\lambda$ is a non-null integer) for a given chain complex, which allows the computation of homological information in the integer domain avoiding using the Smith Normal Form…

Computer Vision and Pattern Recognition · Computer Science 2011-05-24 Rocio Gonzalez-Diaz , Maria Jose Jimenez , Belen Medrano , Pedro Real

Topological Data Analysis (TDA) offers a suite of computational tools that provide quantified shape features in high dimensional data that can be used by modern statistical and predictive machine learning (ML) models. In particular,…

Cryptography and Security · Computer Science 2023-07-06 Dominic Gold , Koray Karabina , Francis C. Motta

The effectiveness of Spatio-temporal Graph Neural Networks (STGNNs) in time-series applications is often limited by their dependence on fixed, hand-crafted input graph structures. Motivated by insights from the Topological Data Analysis…

Machine Learning · Computer Science 2025-03-20 Viet The Nguyen , Duy Anh Pham , An Thai Le , Jans Peter , Gunther Gust

Topological Data Analysis (TDA) combines computational topology and data science to extract and analyze intrinsic topological and geometric structures in data set in a metric space. While the persistent homology (PH), a widely used tool in…

Computational Geometry · Computer Science 2025-04-15 Chuanshen Hu , Yu Wang , Kelin Xia , Ke Ye , Yipeng Zhang

The aim of applied topology is to use and develop topological methods for applied mathematics, science and engineering. One of the main tools is persistent homology, an adaptation of classical homology, which assigns a barcode, i.e. a…

Algebraic Topology · Mathematics 2018-10-09 Sara Kalisnik Verovsek

We present a combinatorial characterization of the Bethe entropy function of a factor graph, such a characterization being in contrast to the original, analytical, definition of this function. We achieve this combinatorial characterization…

Information Theory · Computer Science 2013-11-05 Pascal O. Vontobel

In topological data analysis, persistent homology is used to study the "shape of data". Persistent homology computations are completely characterized by a set of intervals called a bar code. It is often said that the long intervals…

Computational Geometry · Computer Science 2025-02-19 Peter Bubenik , Michael Hull , Dhruv Patel , Benjamin Whittle

Modern business and economic datasets often exhibit nonlinear, multi-scale structures that traditional linear tools under-represent. Topological Data Analysis (TDA) offers a geometric lens for uncovering robust patterns, such as connected…

Machine Learning · Statistics 2025-11-18 Ioannis Diamantis

We propose a refinement of the Betti numbers and of the homology with coefficients in a field of a compact ANR in the presence of a continuous real valued function. The refinement of Betti numbers consists of finite configurations of points…

Algebraic Topology · Mathematics 2018-03-16 Dan Burghelea

The persistence barcode is a topological descriptor of data that plays a fundamental role in topological data analysis. Given a filtration of data, the persistence barcode tracks the evolution of its homology groups. In this paper, we…

Computational Geometry · Computer Science 2025-10-14 Tao Hou , Salman Parsa , Bei Wang