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Related papers: Information Theoretic Modeling of Interspecies Mol…

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Life depends as much on the flow of information as on the flow of energy. Here we review the many efforts to make this intuition precise. Starting with the building blocks of information theory, we explore examples where it has been…

Quantitative Methods · Quantitative Biology 2014-12-31 Gašper Tkačik , William Bialek

Interaction networks, consisting of agents linked by their interactions, are ubiquitous across many disciplines of modern science. Many methods of analysis of interaction networks have been proposed, mainly concentrating on node degree…

Molecular Networks · Quantitative Biology 2011-12-20 Aleksandar Stojmirović , Yi-Kuo Yu

In a molecular communication network, transmitters and receivers communicate by using signalling molecules. At the receivers, the signalling molecules react, via a chain of chemical reactions, to produce output molecules. The counts of…

Molecular Networks · Quantitative Biology 2020-07-23 Chun Tung Chou

This paper focuses on molecular communication (MC) systems using two types of signaling molecules which may participate in a reversible bimolecular reaction in the channel. The motivation for studying these MC systems is that they can…

Information Theory · Computer Science 2019-07-25 Vahid Jamali , Nariman Farsad , Robert Schober , Andrea Goldsmith

We consider the problem of the evolution of a code within a structured population of agents. The agents try to maximise their information about their environment by acquiring information from the outputs of other agents in the population. A…

Multiagent Systems · Computer Science 2015-05-18 Andres C. Burgos , Daniel Polani

Molecular communication (MC) provides a foundational framework for information transmission in the Internet of Bio-Nano Things (IoBNT), where efficiency and reliability are crucial. However, the inherent limitations of molecular channels,…

Signal Processing · Electrical Eng. & Systems 2025-04-02 Hanlin Cai , Ozgur B. Akan

Statistical properties of environments experienced by biological signaling systems in the real world change, which necessitate adaptive responses to achieve high fidelity information transmission. One form of such adaptive response is gain…

Molecular Networks · Quantitative Biology 2012-05-01 Ilya Nemenman

In recent years it is increasingly being recognized that biochemical signals are not necessarily constant in time and that the temporal dynamics of a signal can be the information carrier. Moreover, it is now well established that…

Molecular Networks · Quantitative Biology 2015-06-17 Wiet de Ronde , Pieter Rein ten Wolde

Information delivery via molecular signals is abundant in nature and potentially useful for industry sensing. Many propagation channels (e.g., tissue membranes and catalyst beds) contain porous medium materials and the impact this has on…

Information Theory · Computer Science 2020-04-24 Yuting Fang , Weisi Guo , Matteo Icardi , Adam Noel , Nan Yang

Molecular Communication (MC) is a pivotal enabler for the Internet of Bio-Nano Things (IoBNT). However, current research often relies on super-capable individual agents with complex transceiver architectures that defy the energy and…

Adaptation and Self-Organizing Systems · Physics 2026-01-27 Boran A. Kilic , Ozgur B. Akan

We propose an extension of Hybrid I/O Automata (HIOAs) to model agent systems and their implicit communication through perturbation of the environment, like localization of objects or radio signals diffusion and detection. To this end we…

Formal Languages and Automata Theory · Computer Science 2012-10-10 Marta Capiluppi , Roberto Segala

Changes in a cell's external or internal conditions are usually reflected in the concentrations of the relevant transcription factors. These proteins in turn modulate the expression levels of the genes under their control and sometimes need…

Molecular Networks · Quantitative Biology 2013-08-01 Gasper Tkacik , Curtis G Callan , William Bialek

In this paper, we propose a molecular communication system to localize an abnormality in a diffusion based medium. We consider a general setup to perform joint sensing, communication and localization. This setup consists of three types of…

Signal Processing · Electrical Eng. & Systems 2022-04-01 Ladan Khaloopour , Mahtab Mirmohseni , Masoumeh Nasiri-Kenari

In a diffusion-based molecular communication system, molecules are employed to convey information. When propagation and reception processes are considered in a framework of first passage processes, we need to focus on absorbing receivers.…

Emerging Technologies · Computer Science 2016-09-05 H. Birkan Yilmaz , Gee-Yong Suk , Chan-Byoung Chae

Vegetation often understood merely as the result of long-term climate conditions. However, vegetation itself plays a fundamental role in shaping Earth's climate by regulating the energy, water, and biogeochemical cycles across terrestrial…

Atmospheric and Oceanic Physics · Physics 2024-09-10 Diego G. Miralles , Jordi Vila-Guerau de Arellano , Tim R. McVicar , Miguel D. Mahecha

This paper proposes an environment-aware near-field channel estimation framework for integrated sensing and communication (ISAC) systems equipped with extremely large-scale antenna arrays (ELAAs). The proposed framework jointly exploits…

Information Theory · Computer Science 2026-04-07 Yuan Guo , Yilong Chen , Zixiang Ren , Jie Xu

Exploiting the information provided by the molecular noise of a biological process has proven to be valuable in extracting knowledge about the underlying kinetic parameters and sources of variability from single cell measurements. However,…

Quantitative Methods · Quantitative Biology 2013-08-30 Jakob Ruess , Andreas Milias-Argeitis , John Lygeros

There is substantial variability in the expectations that communication partners bring into interactions, creating the potential for misunderstandings. To directly probe these gaps and our ability to overcome them, we propose a…

Computation and Language · Computer Science 2022-04-28 Sonia K. Murthy , Thomas L. Griffiths , Robert D. Hawkins

Comets contain abundant amounts of organic and inorganic species. Many of the volatile molecules in comets have also been observed in the interstellar medium and some of them even with similar relative abundances, indicating formation under…

Earth and Planetary Astrophysics · Physics 2019-08-09 Martin Rubin , David V. Bekaert , Michael W. Broadley , Maria N. Drozdovskaya , Susanne F. Wampfler

Concentration modulation, whereby information is encoded in the concentration level of chemicals, is considered. One of the main challenges with such systems is the limited control the transmitter has on the concentration level at the…

Emerging Technologies · Computer Science 2015-12-01 Nariman Farsad , Andrea Goldsmith