Related papers: Maximally probable tree topologies with $r$-furcat…
We generalize the concept of ascending and descending runs from permutations to rooted labelled trees and mappings, i.e., functions from the set $\{1, \dots, n\}$ into itself. A combinatorial decomposition of the corresponding functional…
Let $\mathcal{O}_n$ be the set of ordered labeled trees on ${0,...,n}$. A maximal decreasing subtree of an ordered labeled tree is defined by the maximal ordered subtree from the root with all edges being decreasing. In this paper, we study…
Let $T\_n$ denote the set of unrooted labeled trees of size $n$ and let $T\_n$ be a particular (finite, unlabeled) tree. Assuming that every tree of $T\_n$ is equally likely, it is shown that the limiting distribution as $n$ goes to…
Rooted binary perfect phylogenies provide a generalization of rooted binary unlabeled trees in which each leaf is assigned a positive integer value that corresponds in a biological setting to the count of the number of indistinguishable…
We consider the counting problem of the number of \textit{leaf-labeled increasing trees}, where internal nodes may have an arbitrary number of descendants. The set of all such trees is a discrete representation of the genealogies obtained…
We consider a generalisation of the classical Ramsey theory setting to a setting where each of the edges of the underlying host graph is coloured with a {\em set} of colours (instead of just one colour). We give bounds for monochromatic…
The Colijn--Plazzotta ranking is a bijective encoding of the unlabeled binary rooted trees with positive integers. We show that the rank $f(t)$ of a tree $t$ is closely related to its height $h$, the length of the longest path from a leaf…
Motivated by [G. Cannizzaro, M. Hairer, Comm. Pure Applied Math., '22], we provide a construction of the Brownian Web (see [T\'oth B., Werner W., Probab. Theory Related Fields, '98] and [L. R. G. Fontes, M. Isopi, C. M. Newman, and K.…
We estimate the size of a labelled tree by comparing the amount of (labelled) nodes with the size of the set of labels. Roughly speaking, a exponentially big labelled tree, is any labelled tree that has an exponential gap between its size,…
We prove the exact asymptotic $1-\left({\frac{2\pi}{3}-\frac{827}{288\pi}}+o(1)\right)/{\sqrt{n}}$ for the probability that the underlying graph of a random mapping of $n$ elements possesses a unique highest tree. The property of having a…
In this paper, a new concept in graphs namely well-f-coveredness is introduced. We characterize all graphs with such property, whose maximum induced forests are of boundary order. Also we prove several propositions concerning with obtaining…
Plane increasing trees are rooted labeled trees embedded into the plane such that the sequence of labels is increasing on any branch starting at the root. Relaxed binary trees are a subclass of unlabeled directed acyclic graphs. We…
The history of gene families -- which are equivalent to event-labeled gene trees -- can to some extent be reconstructed from empirically estimated evolutionary event-relations containing pairs of orthologous, paralogous or xenologous genes.…
The paper derives new results on the marginal likelihood of a two-way table which clarify the conditions under which Ecological inference is possible and lead to an efficient algorithm for maximizing the exact multinomial likelihood. The…
The problem of graph burning was firstly introduced as a model for different processes of social and network interactions. Recently, the authors of the present paper developed methods of algebraic topology for investigation of this problem.…
In this paper, we propose to study a general notion of a down-up Markov chain for multifurcating trees with n labelled leaves. We study in detail down-up chains associated with the $(\alpha, \gamma)$-model of Chen et al. (2009),…
It is known that all but finitely many leaves of a measured foliated 2-complex of thin type are quasi-isometric to an infinite tree with at most two topological ends. We show that if the foliation is cooriented, and the associated R-tree is…
We develop a novel probabilistic approach for multi-label classification that is based on the mixtures-of-experts architecture combined with recently introduced conditional tree-structured Bayesian networks. Our approach captures different…
We say that an unordered rooted labeled forest avoids the pattern $\pi\in\mathcal{S}_n$ if the sequence obtained from the labels along the path from the root to any vertex does not contain a subsequence that is in the same relative order as…
The Horton-Strahler (HS) index $r=\max{(i,j)}+\delta_{i,j}$ has been shown to be relevant to a number of physical (such at diffusion limited aggregation) geological (river networks), biological (pulmonary arteries, blood vessels, various…