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Deep learning has achieved remarkable success in learning representations for molecules, which is crucial for various biochemical applications, ranging from property prediction to drug design. However, training Deep Neural Networks (DNNs)…

Machine Learning · Computer Science 2023-04-28 Jun Xia , Yanqiao Zhu , Yuanqi Du , Stan Z. Li

We present two models with explicit long-range electrostatics in the form of Coulomb interactions. Both models include point charges depending on their local atomic environments, and the second model also conserves a total charge of an…

Computational Physics · Physics 2026-03-09 Dmitry Korogod , Alexander V. Shapeev , Ivan S. Novikov

Machine learning models for the potential energy of multi-atomic systems, such as the deep potential (DP) model, make possible molecular simulations with the accuracy of quantum mechanical density functional theory, at a cost only…

Machine learning potentials (MLP) allow to perform large-scale molecular dynamics simulations with about the same accuracy as electronic structure calculations provided that the selected model is able to capture the relevant physics of the…

Machine learning has enabled the prediction of quantum chemical properties with high accuracy and efficiency, allowing to bypass computationally costly ab initio calculations. Instead of training on a fixed set of properties, more recent…

Atomic partial charges are crucial parameters for Molecular Dynamics (MD) simulations, molecular mechanics calculations, and virtual screening, as they determine the electrostatic contributions to interaction energies. Current methods for…

Computational Physics · Physics 2019-09-18 Yuanqing Wang , Josh Fass , Chaya D. Stern , Kun Luo , John Chodera

Unsupervised anomaly detection encompasses diverse applications in industrial settings where a high-throughput and precision is imperative. Early works were centered around one-class-one-model paradigm, which poses significant challenges in…

Computer Vision and Pattern Recognition · Computer Science 2024-05-13 Sushovan Jena , Vishwas Saini , Ujjwal Shaw , Pavitra Jain , Abhay Singh Raihal , Anoushka Banerjee , Sharad Joshi , Ananth Ganesh , Arnav Bhavsar

Most state-of-the-art neural network potentials do not account for molecular attributes other than atomic numbers and positions, which limits its range of applicability by design. In this work, we demonstrate the importance of including…

Machine Learning · Computer Science 2025-02-10 Guillem Simeon , Antonio Mirarchi , Raul P. Pelaez , Raimondas Galvelis , Gianni De Fabritiis

Electrical discharge machining (EDM) is a crucial process in precision manufacturing, leveraging electro-thermal energy to remove material without electrode contact. In this study, we delve into the realm of Machine Learning (ML) to enhance…

Mesoscale and Nanoscale Physics · Physics 2026-05-15 Mohsen Asghari Ilani , Yaser Mike Banad

The study proposes a quote-driven predictive automated market maker (AMM) platform with on-chain custody and settlement functions, alongside off-chain predictive reinforcement learning capabilities to improve liquidity provision of…

Trading and Market Microstructure · Quantitative Finance 2023-01-27 Tristan Lim

Price signals from distribution networks (DNs) guide energy communities (ECs) in adjusting their energy usage, enabling effective coordination for reliable power system operation. However, this coordinated operation faces significant…

Optimization and Control · Mathematics 2026-03-02 Yingrui Zhuang , Lin Cheng , Yuji Cao , Tongxin Li , Ning Qi , Yan Xu , Yue Chen

Graph neural networks (GNNs) have shown considerable promise in computational chemistry. However, the limited availability of molecular data raises concerns regarding GNNs' ability to effectively capture the fundamental principles of…

Machine Learning · Computer Science 2025-03-12 Junyi An , Chao Qu , Yun-Fei Shi , XinHao Liu , Qianwei Tang , Fenglei Cao , Yuan Qi

We have developed a deep learning algorithm for chemical shift prediction for atoms in molecular crystals that utilizes an atom-centered Gaussian density model for the 3D data representation of a molecule. We define multiple channels that…

Deep learning models have achieved strong performance in medical image analysis, but their internal decision processes remain difficult to interpret. Concept Bottleneck Models (CBMs) partially address this limitation by structuring…

Computer Vision and Pattern Recognition · Computer Science 2026-03-24 Getamesay Dagnaw , Xuefei Yin , Muhammad Hassan Maqsood , Yanming Zhu , Alan Wee-Chung Liew

The combination of neural network potential (NNP) with molecular simulations plays an important role in an efficient and thorough understanding of a molecular system's potential energy surface (PES). However, grasping the interplay between…

Computational Physics · Physics 2021-10-28 Ji Woong Yu , Min Young Ha , Bumjoon Seo , Won Bo Lee

Deep neural networks (DNNs) have been used to successfully predict molecular properties calculated based on the Kohn--Sham density functional theory (KS-DFT). Although this prediction is fast and accurate, we believe that a DNN model for…

Chemical Physics · Physics 2020-11-17 Masashi Tsubaki , Teruyasu Mizoguchi

Predicting quantum operator matrices such as Hamiltonian, overlap, and density matrices in the density functional theory (DFT) framework is crucial for material science. Current methods often focus on individual operators and struggle with…

Materials Science · Physics 2025-03-12 Zhanghao Zhouyin , Zixi Gan , MingKang Liu , Shishir Kumar Pandey , Linfeng Zhang , Qiangqiang Gu

Parameterizable machine learning (ML) accelerators are the product of recent breakthroughs in ML. To fully enable their design space exploration (DSE), we propose a physical-design-driven, learning-based prediction framework for…

Compressive sensing (CS) is an effective approach for fast Magnetic Resonance Imaging (MRI). It aims at reconstructing MR images from a small number of under-sampled data in k-space, and accelerating the data acquisition in MRI. To improve…

Computer Vision and Pattern Recognition · Computer Science 2017-05-22 Yan Yang , Jian Sun , Huibin Li , Zongben Xu

The electric vehicle (EV) and electric vehicle charging station (EVCS) have been widely deployed with the development of large-scale transportation electrifications. However, since charging behaviors of EVs show large uncertainties, the…

Systems and Control · Electrical Eng. & Systems 2023-01-25 Yuanzheng Li , Shangyang He , Yang Li , Leijiao Ge , Suhua Lou , Zhigang Zeng